RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA339266", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA339266 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27517054 27517054 PRJNA339266_P_NODE_4283_length_190_cov_3.607843_g4253_i0 PRJNA339266 4283 190 3.607843 6.8549017 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 95.1 5.68e-23   NR MEO7359833.1 2026741 g4253 i0 87.8 0.773684210526316 49 6 77.4 0 43 189 1 49 MEO7359833.1 6,7-dimethyl-8-ribityllumazine synthase [Gemmatimonadaceae bacterium] diamond 147 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32066096 32066096 PRJNA339266_S_NODE_3398_length_235_cov_18.080808_g3387_i0 PRJNA339266 3398 235 18.080808 42.4898988 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 94.7 2.4e-22   NR HYW51047.1 2026741 g3387 i0 87.5 0.714893617021277 56 7 71.5 0 62 229 1 56 HYW51047.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 94.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;