RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA335774" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27264368 27264368 PRJNA335774_P_NODE_16663_length_369_cov_1.972973_g16511_i0 PRJNA335774 16663 369 1.972973 7.28027037 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 85.1 2.67e-17   NR ETO02709.1 46433 g16511 i0 46.7 5.20325203252033 107 54 84.6 2 327 16 88 194 ETO02709.1 polyubiquitin [Reticulomyxa filosa] diamond 1920 85.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28039542 28039542 PRJNA335774_P_NODE_28985_length_292_cov_1.045662_g28833_i0 PRJNA335774 28985 292 1.045662 3.05333304 root 1 Root_unresolved Root_unresolved 44.3 0.0178   NR ETO02495.1 46433 g28833 i0 31.6 5.67123287671233 57 37 56.5 1 114 278 134 190 ETO02495.1 hypothetical protein RFI_34935, partial [Reticulomyxa filosa] diamond 1656 44.7 0.991051454138702 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;