RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA335774" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA335774 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30074459 30074459 PRJNA335774_P_NODE_29952_length_287_cov_1.771028_g29800_i0 PRJNA335774 29952 287 1.771028 5.08285036 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 104 6.13e-25   NR XP_004340861.1 1257118 g29800 i0 61.7 2.47735191637631 81 31 84.7 0 263 21 123 203 XP_004340861.1 actin subfamily protein [Acanthamoeba castellanii str. Neff] diamond 711 104 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30359471 30359471 PRJNA335774_P_NODE_2032_length_878_cov_1.554037_g1919_i0 PRJNA335774 2032 878 1.554037 13.64444486 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 371 8.950000000000001e-123   NR XP_004358245.1 1257118 g1919 i0 63.4 1.98519362186788 292 96 98.4 3 10 873 1 285 XP_004358245.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 1743 371 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31907917 31907917 PRJNA335774_P_NODE_14597_length_390_cov_1.208202_g14445_i0 PRJNA335774 14597 390 1.208202 4.7119878 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.2 9.86e-10   NR XP_004367869.1 1257118 g14445 i0 52.1 0.546153846153846 71 32 53.1 1 2 208 288 358 XP_004367869.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 213 66.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;