RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA335774", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 20 ✖

tax_phylum 1

  • Chloroflexota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA335774 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4217605 4217605 PRJNA335774_P_NODE_26964_length_301_cov_1.596491_g26812_i0 PRJNA335774 26964 301 1.596491 4.80543791 Chloroflexus aggregans 152260 Bacteria Bacteria 52.8 0.028   NTclustered gi|219541215|gb|CP001337.1| 326427 g26812 i0 100 0.0930232558139535 28 0 9 0 172 199 3476661 3476634 Chloroflexus aggregans DSM 9485, complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans
18242399 18242399 PRJNA335774_P_NODE_46715_length_243_cov_0.905882_g46563_i0 PRJNA335774 46715 243 0.905882 2.20129326 Caldilinea 233191 Bacteria Bacteria 148 2.7899999999999998e-42   NR MCB0024496.1 2293560 g46563 i0 91.3 5.92592592592593 80 7 98.8 0 241 2 84 163 MCB0024496.1 tripartite tricarboxylate transporter substrate binding protein [Caldilinea sp.] diamond 1440 149 0.993288590604027 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea sp.
27359299 27359299 PRJNA335774_P_NODE_47603_length_242_cov_0.911243_g47451_i0 PRJNA335774 47603 242 0.911243 2.20520806 Caldilineaceae bacterium 2614250 Bacteria Bacteria 65.1 4.42e-10   NR MFN8467997.1 2614250 g47451 i0 55.7 1.69834710743802 61 25 75.6 1 3 185 20 78 MFN8467997.1 DUF917 domain-containing protein [Caldilineaceae bacterium] diamond 411 65.1 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
27422494 27422494 PRJNA335774_P_NODE_25203_length_311_cov_0.970588_g25051_i0 PRJNA335774 25203 311 0.970588 3.01852868 Ktedonobacteraceae bacterium 2740538 Bacteria Bacteria 154 5.72e-41   NR HVB61871.1 2740538 g25051 i0 67 7.94855305466238 103 34 99.4 0 1 309 662 764 HVB61871.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Ktedonobacteraceae bacterium] diamond 2472 154 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae   Ktedonobacteraceae bacterium
27516989 27516989 PRJNA335774_P_NODE_1003_length_1140_cov_2.213683_g943_i0 PRJNA335774 1003 1140 2.213683 25.2359862 Candidatus Chlorohelix sp. 3139201 Bacteria Bacteria 114 1.9599999999999994e-23   NR WP_342398676.1 3139201 g943 i0 29.5 1.00789473684211 383 208 84.7 12 137 1102 485 866 WP_342398676.1 NHL repeat-containing protein [Candidatus Chlorohelix sp.] diamond 1149 114 1 Bacteria   Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Candidatus Chloroheliaceae Candidatus Chlorohelix Candidatus Chlorohelix sp.
28779797 28779797 PRJNA335774_P_NODE_22007_length_329_cov_0.957031_g21855_i0 PRJNA335774 22007 329 0.957031 3.14863199 Levilinea saccharolytica 229921 Bacteria Bacteria 74.7 5.48e-13   NR WP_062417235.1 229921 g21855 i0 46.1 1.79635258358663 102 49 93 3 328 23 253 348 WP_062417235.1 fasciclin domain-containing protein [Levilinea saccharolytica] diamond 591 74.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Levilinea Levilinea saccharolytica
28779801 28779801 PRJNA335774_P_NODE_2527_length_809_cov_1.672554_g2399_i0 PRJNA335774 2527 809 1.672554 13.53096186 Anaerolineales bacterium 2073117 Bacteria Bacteria 356 2.38e-116   NR HLE51792.1 2073117 g2399 i0 59.1 3.10383189122373 276 103 99.4 4 2 805 274 547 HLE51792.1 hypothetical protein [Anaerolineales bacterium] diamond 2511 356 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29001355 29001355 PRJNA335774_P_NODE_12208_length_422_cov_0.939828_g12056_i0 PRJNA335774 12208 422 0.939828 3.96607416 uncultured Thermanaerothrix sp. 1195149 Bacteria Bacteria 126 1.1e-32   NR WP_299029763.1 1195149 g12056 i0 52.3 0.938388625592417 132 60 93.8 1 406 11 6 134 WP_299029763.1 ADP-ribosylglycohydrolase family protein [uncultured Thermanaerothrix sp.] diamond 396 126 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Thermanaerothrix uncultured Thermanaerothrix sp.
29127511 29127511 PRJNA335774_P_NODE_25709_length_308_cov_1.148936_g25557_i0 PRJNA335774 25709 308 1.148936 3.53872288 Chloroflexota bacterium 2026724 Bacteria Bacteria 48.1 0.00103   NR NDJ63184.1 2026724 g25557 i0 38 0.691558441558442 71 38 66.2 3 272 69 580 647 NDJ63184.1 hypothetical protein [Chloroflexota bacterium] diamond 213 48.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29600623 29600623 PRJNA335774_P_NODE_46070_length_243_cov_1.252941_g45918_i0 PRJNA335774 46070 243 1.252941 3.04464663 Aggregatilineales bacterium 2952883 Bacteria Bacteria 48.9 2.49e-4   NR HUN10333.1 2952883 g45918 i0 52.1 1.40740740740741 48 22 59.3 1 202 59 896 942 HUN10333.1 CHAT domain-containing protein [Aggregatilineales bacterium] diamond 342 48.9 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium
30881744 30881744 PRJNA335774_P_NODE_47554_length_242_cov_0.911243_g47402_i0 PRJNA335774 47554 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 87 4.23e-20   NR MCH8008312.1 2026724 g47402 i0 48.7 7.25206611570248 78 40 96.7 0 1 234 11 88 MCH8008312.1 aquaporin [Chloroflexota bacterium] diamond 1755 87 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30927889 30927889 PRJNA335774_P_NODE_48254_length_241_cov_0.916667_g48102_i0 PRJNA335774 48254 241 0.916667 2.20916747 Chloroflexota bacterium 2026724 Bacteria Bacteria 82 9.7e-17   NR MCH7698460.1 2026724 g48102 i0 52.5 2.43983402489627 61 29 75.9 0 3 185 180 240 MCH7698460.1 MIP family channel protein [Chloroflexota bacterium] diamond 588 82 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31211632 31211632 PRJNA335774_P_NODE_2715_length_787_cov_1.873950_g2586_i0 PRJNA335774 2715 787 1.87395 14.7479865 Chloroflexota bacterium 2026724 Bacteria Bacteria 104 2.13e-22   NR MCY4018995.1 2026724 g2586 i0 45.3 2.20330368487929 148 67 55.7 4 786 349 160 295 MCY4018995.1 homocysteine S-methyltransferase family protein [Chloroflexota bacterium] diamond 1734 104 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31703793 31703793 PRJNA335774_P_NODE_45437_length_244_cov_0.900585_g45285_i0 PRJNA335774 45437 244 0.900585 2.1974274 Chloroflexota 200795 Bacteria Bacteria 120 1.05e-29   NR MCB0018796.1 2073117 g45285 i0 65.4 3.98360655737705 81 26 98.4 2 240 1 106 185 MCB0018796.1 CocE/NonD family hydrolase [Anaerolineales bacterium] diamond 972 121 0.991735537190083 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31971169 31971169 PRJNA335774_P_NODE_18158_length_356_cov_1.689046_g18006_i0 PRJNA335774 18158 356 1.689046 6.01300376 Dehalogenimonas sp. THU2 3151121 Bacteria Bacteria 45.4 0.0113   NR WP_346999026.1 3151121 g18006 i0 42.9 0.471910112359551 56 32 47.2 0 173 6 86 141 WP_346999026.1 hypothetical protein [Dehalogenimonas sp. THU2] diamond 168 45.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas sp. THU2
32034553 32034553 PRJNA335774_P_NODE_45358_length_244_cov_0.900585_g45206_i0 PRJNA335774 45358 244 0.900585 2.1974274 Chloroflexota bacterium 2026724 Bacteria Bacteria 50.4 3.6e-5   NR TMC24550.1 2026724 g45206 i0 40.3 0.94672131147541 77 33 81.1 4 200 3 94 168 TMC24550.1 MAG: hypothetical protein E6J33_00925, partial [Chloroflexota bacterium] diamond 231 50.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32210036 32210036 PRJNA335774_P_NODE_21818_length_330_cov_1.198444_g21666_i0 PRJNA335774 21818 330 1.198444 3.9548652 root 1 Root_unresolved Root_unresolved 44.3 0.0272   NR HLE80903.1 2026734 g21666 i0 28.9 2.07272727272727 114 63 89.1 6 301 8 66 177 HLE80903.1 hypothetical protein [Dehalococcoidia bacterium] diamond 684 44.3 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
32288014 32288014 PRJNA335774_P_NODE_48759_length_231_cov_2.227848_g48607_i0 PRJNA335774 48759 231 2.227848 5.14632888 Chloroflexota bacterium 2026724 Bacteria Bacteria 45.8 0.00236   NR MEN9935292.1 2026724 g48607 i0 36.7 1.76623376623377 49 31 63.6 0 32 178 178 226 MEN9935292.1 hypothetical protein [Chloroflexota bacterium] diamond 408 45.8 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32494941 32494941 PRJNA335774_P_NODE_16199_length_374_cov_0.906977_g16047_i0 PRJNA335774 16199 374 0.906977 3.39209398 Bacteria 2 Bacteria Bacteria 62 2.77e-8   NR MCS5643244.1 2026734 g16047 i0 31.1 2.0855614973262 132 70 89 2 374 42 130 261 MCS5643244.1 3'-5' exonuclease [Dehalococcoidia bacterium] diamond 780 62 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
32729892 32729892 PRJNA335774_P_NODE_46860_length_242_cov_1.449704_g46708_i0 PRJNA335774 46860 242 1.449704 3.50828368 Chloroflexi bacterium TSY 2834438 Bacteria Bacteria 42.4 0.0472   NR MBV7332066.1 2834438 g46708 i0 30.6 0.892561983471074 72 50 89.3 0 222 7 41 112 MBV7332066.1 ABC transporter permease [Chloroflexi bacterium TSY] diamond 216 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium TSY

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;