RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA335774", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA335774 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493852 5493852 PRJNA335774_P_NODE_25485_length_309_cov_1.487288_g25333_i0 PRJNA335774 25485 309 1.487288 4.59571992 Treponema primitia 88058 Bacteria Bacteria 54.7 0.008   NTclustered gi|333738032|gb|CP001843.1| 545694 g25333 i0 100 0.184466019417476 29 0 9 0 116 144 3099569 3099597 Treponema primitia ZAS-2, complete genome blastn 57 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema primitia
15692945 15692945 PRJNA335774_P_NODE_23433_length_320_cov_1.627530_g23281_i0 PRJNA335774 23433 320 1.62753 5.208096 Borreliella burgdorferi 139 Bacteria Bacteria 54.7 0.008   NTclustered gi|226201945|gb|CP001557.1| 498738 g23281 i0 100 0.440625 29 0 9 0 208 236 28448 28420 Borrelia burgdorferi 29805 plasmid 29805_lp36, complete sequence blastn 141 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella burgdorferi
27724098 27724098 PRJNA335774_P_NODE_32704_length_276_cov_1.133005_g32552_i0 PRJNA335774 32704 276 1.133005 3.1270938 root 1 Root_unresolved Root_unresolved 117 3.15e-29   NR WP_083048064.1 1963862 g32552 i0 62.6 18.7391304347826 91 34 98.9 0 275 3 221 311 WP_083048064.1 2-hydroxyacid dehydrogenase [Marispirochaeta aestuarii] diamond 5172 117 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Marispirochaeta Marispirochaeta aestuarii
31229176 31229176 PRJNA335774_P_NODE_46795_length_242_cov_1.952663_g46643_i0 PRJNA335774 46795 242 1.952663 4.72544446 root 1 Root_unresolved Root_unresolved 51.6 6.08e-6   NR UCB45765.1 2202144 g46643 i0 47.4 4.31404958677686 57 28 69.4 2 242 75 36 91 UCB45765.1 MAG: hypothetical protein JSV25_16440 [Spirochaetota bacterium] diamond 1044 52 0.992307692307692 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;