RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA335774", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6768591 6768591 PRJNA335774_P_NODE_9606_length_467_cov_1.172589_g9454_i0 PRJNA335774 9606 467 1.172589 5.47599063 Thermoplasmatota archaeon 2806419 Archaea Archaea 132 8.48e-35   NR MEF8873749.1 2806419 g9454 i0 48 6.56531049250535 127 61 81.6 1 381 1 60 181 MEF8873749.1 peptide-methionine (S)-S-oxide reductase MsrA [Thermoplasmatota archaeon] diamond 3066 132 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32002914 32002914 PRJNA335774_P_NODE_33558_length_272_cov_1.547739_g33406_i0 PRJNA335774 33558 272 1.547739 4.20985008 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 64.3 1.28e-9   NR MCP2503036.1 2670411 g33406 i0 68.3 4.34558823529412 41 13 45.2 0 2 124 372 412 MCP2503036.1 pyridoxal phosphate-dependent aminotransferase [Candidatus Thalassarchaeaceae archaeon] diamond 1182 64.3 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;