RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

35 rows where bioproject = "PRJNA335774", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 35 ✖

tax_kingdom 1

  • Metazoa · 35 ✖

tax_clade 1

bioproject 1

  • PRJNA335774 · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9318694 9318694 PRJNA335774_P_NODE_43188_length_247_cov_0.804598_g43036_i0 PRJNA335774 43188 247 0.804598 1.98735706 Lingula anatina 7574 Brachiopoda other_Eukaryota 112 9.16e-27   NR XP_013409611.1 7574 g43036 i0 60.5 1.04453441295547 86 30 99.6 2 247 2 2063 2148 XP_013409611.1 zinc finger MYM-type protein 2 [Lingula anatina] diamond 258 112 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
9997837 9997837 PRJNA335774_P_NODE_39408_length_251_cov_0.865169_g39256_i0 PRJNA335774 39408 251 0.865169 2.17157419 Metazoa 33208 Brachiopoda other_Eukaryota 125 1.44e-31   NR XP_013384439.1 7574 g39256 i0 77.1 1.9840637450199201 83 19 99.2 0 251 3 104 186 XP_013384439.1 T-complex protein 1 subunit zeta [Lingula anatina] diamond 498 125 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
10593788 10593788 PRJNA335774_P_NODE_16009_length_375_cov_1.711921_g15857_i0 PRJNA335774 16009 375 1.711921 6.41970375 Lingula anatina 7574 Brachiopoda other_Eukaryota 252 3.28e-62   NTclustered gi|919062094|ref|XM_013557244.1| 7574 g15857 i0 79.133 4.90133333333333 369 73 98 4 1 367 9556 9922 PREDICTED: Lingula anatina dynein heavy chain 2, axonemal (LOC106175301), mRNA blastn 1838 252 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
12548264 12548264 PRJNA335774_P_NODE_5130_length_610_cov_3.668529_g4984_i0 PRJNA335774 5130 610 3.668529 22.3780269 Metazoa 33208 Brachiopoda other_Eukaryota 316 1.7899999999999994e-107   NR XP_013399327.1 7574 g4984 i0 79.3 3.81147540983607 193 40 94.9 0 589 11 2 194 XP_013399327.1 40S ribosomal protein S7 [Lingula anatina] diamond 2325 318 0.993710691823899 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
14419415 14419415 PRJNA335774_P_NODE_3812_length_687_cov_4.429967_g3670_i0 PRJNA335774 3812 687 4.429967 30.43387329 Metazoa 33208 Brachiopoda other_Eukaryota 352 2.979999999999999e-118   NR XP_013389397.1 7574 g3670 i0 77.5 2.97379912663755 227 51 99.1 0 685 5 119 345 XP_013389397.1 60S ribosomal protein L4 [Lingula anatina] diamond 2043 352 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
18241551 18241551 PRJNA335774_P_NODE_10495_length_450_cov_1.225464_g10343_i0 PRJNA335774 10495 450 1.225464 5.514588 Lingula anatina 7574 Brachiopoda other_Eukaryota 193 3.83e-60   NR XP_013407215.1 7574 g10343 i0 73.6 3.22 121 32 80.7 0 3 365 47 167 XP_013407215.1 RNA-binding protein 8A [Lingula anatina] diamond 1449 193 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
20791635 20791635 PRJNA335774_P_NODE_20257_length_340_cov_3.041199_g20105_i0 PRJNA335774 20257 340 3.041199 10.3400766 Metazoa 33208 Brachiopoda other_Eukaryota 132 1.23e-37   NR XP_013403352.1 7574 g20105 i0 73.2 32.3558823529412 82 22 72.4 0 30 275 1 82 XP_013403352.1 40S ribosomal protein S21-like [Lingula anatina] diamond 11001 132 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
23342622 23342622 PRJNA335774_P_NODE_44099_length_246_cov_0.890173_g43947_i0 PRJNA335774 44099 246 0.890173 2.18982558 Metazoa 33208 Brachiopoda other_Eukaryota 146 6.659999999999999e-40   NR XP_013417150.1 7574 g43947 i0 81.5 3.95121951219512 81 15 98.8 0 245 3 370 450 XP_013417150.1 microfibrillar-associated protein 1 [Lingula anatina] diamond 972 146 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27123224 27123224 PRJNA335774_P_NODE_26842_length_302_cov_1.052402_g26690_i0 PRJNA335774 26842 302 1.052402 3.17825404 Metazoa 33208 Brachiopoda other_Eukaryota 122 3.74e-31   NR XP_013382245.1 7574 g26690 i0 56.1 4.88741721854305 98 42 97.4 1 9 302 101 197 XP_013382245.1 tumor suppressor candidate 3 [Lingula anatina] diamond 1476 122 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27787048 27787048 PRJNA335774_P_NODE_17784_length_360_cov_0.794425_g17632_i0 PRJNA335774 17784 360 0.794425 2.85993 Metazoa 33208 Brachiopoda other_Eukaryota 162 6.06e-48   NR XP_013395948.1 7574 g17632 i0 62.2 24.8083333333333 119 45 99.2 0 358 2 30 148 XP_013395948.1 eukaryotic translation initiation factor 3 subunit K [Lingula anatina] diamond 8931 162 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27895807 27895807 PRJNA335774_P_NODE_31985_length_279_cov_1.121359_g31833_i0 PRJNA335774 31985 279 1.121359 3.12859161 Lingula anatina 7574 Brachiopoda other_Eukaryota 127 3.36e-33   NR XP_013391481.1 7574 g31833 i0 63 1.97849462365591 92 34 98.9 0 278 3 220 311 XP_013391481.1 uncharacterized protein LOC106159668 isoform X3 [Lingula anatina] diamond 552 127 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28039539 28039539 PRJNA335774_P_NODE_13865_length_398_cov_2.452308_g13713_i0 PRJNA335774 13865 398 2.452308 9.76018584 Metazoa 33208 Brachiopoda other_Eukaryota 159 6.469999999999999e-47   NR XP_013407261.1 7574 g13713 i0 81.9 20.7889447236181 105 19 79.1 0 82 396 1 105 XP_013407261.1 transcription factor BTF3 homolog 4 [Lingula anatina] diamond 8274 160 0.99375 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28085253 28085253 PRJNA335774_P_NODE_27085_length_301_cov_1.013158_g26933_i0 PRJNA335774 27085 301 1.013158 3.04960558 Lingula anatina 7574 Brachiopoda other_Eukaryota 133 9.359999999999999e-34   NR XP_013411882.1 7574 g26933 i0 75.5 0.93687707641196 94 23 93.7 0 3 284 82 175 XP_013411882.1 ubiquitin-like modifier-activating enzyme 1 [Lingula anatina] diamond 282 133 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28211456 28211456 PRJNA335774_P_NODE_45866_length_244_cov_0.877193_g45714_i0 PRJNA335774 45866 244 0.877193 2.14035092 Lingula anatina 7574 Brachiopoda other_Eukaryota 107 1.06e-25   NR XP_013390336.1 7574 g45714 i0 56.8 1.99180327868852 81 35 99.6 0 1 243 128 208 XP_013390336.1 RNA-binding protein squid isoform X2 [Lingula anatina] diamond 486 107 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28338008 28338008 PRJNA335774_P_NODE_45746_length_244_cov_0.900585_g45594_i0 PRJNA335774 45746 244 0.900585 2.1974274 Lingula anatina 7574 Brachiopoda other_Eukaryota 94.4 2.6e-20   NR XP_013387421.1 7574 g45594 i0 56.8 0.995901639344262 81 35 99.6 0 2 244 427 507 XP_013387421.1 tether containing UBX domain for GLUT4 isoform X2 [Lingula anatina] diamond 243 94.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28906079 28906079 PRJNA335774_P_NODE_988_length_1148_cov_1.734884_g929_i0 PRJNA335774 988 1148 1.734884 19.91646832 Lingula anatina 7574 Brachiopoda other_Eukaryota 334 9.04e-107   NR XP_013384044.2 7574 g929 i0 51.3 0.880662020905923 337 151 87 8 1147 149 174 501 XP_013384044.2 lactase-phlorizin hydrolase [Lingula anatina] diamond 1011 334 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29018575 29018575 PRJNA335774_P_NODE_26748_length_302_cov_1.672489_g26596_i0 PRJNA335774 26748 302 1.672489 5.05091678 Metazoa 33208 Brachiopoda other_Eukaryota 107 1.17e-27   NR XP_013386384.1 7574 g26596 i0 57.1 3.89403973509934 98 41 97.4 1 297 4 10 106 XP_013386384.1 fatty acid-binding protein, heart [Lingula anatina] diamond 1176 107 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29018578 29018578 PRJNA335774_P_NODE_29668_length_289_cov_0.949074_g29516_i0 PRJNA335774 29668 289 0.949074 2.74282386 Metazoa 33208 Brachiopoda other_Eukaryota 103 3.8299999999999997e-23   NR XP_023932627.1 7574 g29516 i0 50 4.86851211072664 92 46 95.5 0 2 277 319 410 XP_023932627.1 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like [Lingula anatina] diamond 1407 103 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29554829 29554829 PRJNA335774_P_NODE_30030_length_287_cov_1.266355_g29878_i0 PRJNA335774 30030 287 1.266355 3.63443885 Metazoa 33208 Brachiopoda other_Eukaryota 107 1.6099999999999997e-24   NR XP_013397069.2 7574 g29878 i0 55.9 3.88850174216028 93 40 97.2 1 281 3 490 581 XP_013397069.2 cysteine--tRNA ligase, cytoplasmic-like, partial [Lingula anatina] diamond 1116 107 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29586284 29586284 PRJNA335774_P_NODE_14090_length_396_cov_0.950464_g13938_i0 PRJNA335774 14090 396 0.950464 3.76383744 Metazoa 33208 Brachiopoda other_Eukaryota 132 3.12e-36   NR XP_013386986.1 7574 g13938 i0 70.8 12.1136363636364 89 26 67.4 0 269 3 29 117 XP_013386986.1 protein max [Lingula anatina] diamond 4797 132 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29600597 29600597 PRJNA335774_P_NODE_25690_length_308_cov_1.280851_g25538_i0 PRJNA335774 25690 308 1.280851 3.94502108 Lingula anatina 7574 Brachiopoda other_Eukaryota 81.3 2.34e-15   NR XP_013410745.1 7574 g25538 i0 42.9 0.954545454545455 98 51 90.6 1 3 281 519 616 XP_013410745.1 nuclear RNA export factor 1 [Lingula anatina] diamond 294 81.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30186596 30186596 PRJNA335774_P_NODE_40552_length_249_cov_1.380682_g40400_i0 PRJNA335774 40552 249 1.380682 3.43789818 Metazoa 33208 Brachiopoda other_Eukaryota 55.5 1.34e-6   NR XP_013384760.2 7574 g40400 i0 40.9 4.12048192771084 66 38 79.5 1 46 243 28 92 XP_013384760.2 sphingosine-1-phosphate lyase 1 isoform X2 [Lingula anatina] diamond 1026 55.5 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30313616 30313616 PRJNA335774_P_NODE_4392_length_648_cov_2.000000_g4249_i0 PRJNA335774 4392 648 2 12.96 Metazoa 33208 Brachiopoda other_Eukaryota 349 2.569999999999999e-119   NR XP_013403608.1 7574 g4249 i0 81.1 7.06018518518519 217 39 99.5 1 647 3 45 261 XP_013403608.1 40S ribosomal protein S3a [Lingula anatina] diamond 4575 350 0.997142857142857 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30391086 30391086 PRJNA335774_P_NODE_9973_length_459_cov_6.484456_g9821_i0 PRJNA335774 9973 459 6.484456 29.76365304 Novocrania anomala 317945 Brachiopoda other_Eukaryota 115 2.8199999999999997e-30   NR ACD65133.1 317945 g9821 i0 74.3 0.457516339869281 70 18 45.8 0 81 290 1 70 ACD65133.1 putative 60S ribosomal protein RPLP1 [Novocrania anomala] diamond 210 115 1 Eukaryota Opisthokonta Metazoa Brachiopoda Craniata Craniida Craniidae Novocrania Novocrania anomala
30787048 30787048 PRJNA335774_P_NODE_43514_length_246_cov_0.890173_g43362_i0 PRJNA335774 43514 246 0.890173 2.18982558 Metazoa 33208 Brachiopoda other_Eukaryota 53.9 4.55e-6   NR XP_013405663.1 7574 g43362 i0 88.5 4.1219512195122 26 3 31.7 0 80 3 5855 5880 XP_013405663.1 hydrocephalus-inducing protein [Lingula anatina] diamond 1014 53.9 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30818642 30818642 PRJNA335774_P_NODE_39014_length_251_cov_0.865169_g38862_i0 PRJNA335774 39014 251 0.865169 2.17157419 Metazoa 33208 Brachiopoda other_Eukaryota 124 2.4799999999999996e-31   NR XP_013409543.1 7574 g38862 i0 64.2 50.3665338645418 81 29 96.8 0 8 250 173 253 XP_013409543.1 UDP-N-acetylhexosamine pyrophosphorylase isoform X6 [Lingula anatina] diamond 12642 125 0.992 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31071531 31071531 PRJNA335774_P_NODE_48155_length_241_cov_0.916667_g48003_i0 PRJNA335774 48155 241 0.916667 2.20916747 Metazoa 33208 Brachiopoda other_Eukaryota 108 2.58e-25   NR XP_013416715.1 7574 g48003 i0 62.3 3.84647302904564 77 29 95.9 0 8 238 310 386 XP_013416715.1 lipoxygenase homology domain-containing protein 1 isoform X2 [Lingula anatina] diamond 927 108 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31608946 31608946 PRJNA335774_P_NODE_24296_length_316_cov_0.950617_g24144_i0 PRJNA335774 24296 316 0.950617 3.00394972 Metazoa 33208 Brachiopoda other_Eukaryota 105 1.1199999999999999e-23   NR XP_013385160.1 7574 g24144 i0 66.7 15.4082278481013 63 21 59.8 0 9 197 283 345 XP_013385160.1 zinc finger protein 608 isoform X1 [Lingula anatina] diamond 4869 105 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32446087 32446087 PRJNA335774_P_NODE_7399_length_521_cov_1.363839_g7247_i0 PRJNA335774 7399 521 1.363839 7.10560119 Lingula anatina 7574 Brachiopoda other_Eukaryota 162 1.5499999999999998e-48   NR XP_013406842.1 7574 g7247 i0 76.9 1.19769673704415 104 24 59.9 0 499 188 1 104 XP_013406842.1 c-Myc-binding protein-like [Lingula anatina] diamond 624 162 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32463278 32463278 PRJNA335774_P_NODE_33679_length_272_cov_1.150754_g33527_i0 PRJNA335774 33679 272 1.150754 3.13005088 Metazoa 33208 Brachiopoda other_Eukaryota 158 5.3000000000000003e-45   NR XP_013397292.2 7574 g33527 i0 85.6 11.8676470588235 90 13 99.3 0 270 1 80 169 XP_013397292.2 splicing factor 3A subunit 2-like [Lingula anatina] diamond 3228 159 0.993710691823899 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32572613 32572613 PRJNA335774_P_NODE_23999_length_317_cov_1.577869_g23847_i0 PRJNA335774 23999 317 1.577869 5.00184473 Lingula anatina 7574 Brachiopoda other_Eukaryota 162 3.47e-46   NR XP_013391205.1 7574 g23847 i0 74 2.95268138801262 104 27 98.4 0 314 3 43 146 XP_013391205.1 proliferation-associated protein 2G4 [Lingula anatina] diamond 936 162 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32603865 32603865 PRJNA335774_P_NODE_16920_length_367_cov_1.625850_g16768_i0 PRJNA335774 16920 367 1.62585 5.9668695 Lingula anatina 7574 Brachiopoda other_Eukaryota 102 1.09e-22   NR XP_013381935.1 7574 g16768 i0 35.5 0.989100817438692 121 77 98.1 1 362 3 232 352 XP_013381935.1 indolethylamine N-methyltransferase-like [Lingula anatina] diamond 363 102 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32666742 32666742 PRJNA335774_P_NODE_13000_length_410_cov_1.516320_g12848_i0 PRJNA335774 13000 410 1.51632 6.216912 Lingula anatina 7574 Brachiopoda other_Eukaryota 98.2 1.47e-21   NR XP_013419820.1 7574 g12848 i0 40.6 1.00975609756098 138 64 99.5 2 3 410 121 242 XP_013419820.1 uncharacterized protein LOC106180388 [Lingula anatina] diamond 414 98.2 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32761272 32761272 PRJNA335774_P_NODE_36760_length_259_cov_1.241935_g36608_i0 PRJNA335774 36760 259 1.241935 3.21661165 Lingula anatina 7574 Brachiopoda other_Eukaryota 74.3 3.28e-13   NR XP_013414077.1 7574 g36608 i0 42.9 1.05405405405405 91 46 98.5 1 257 3 48 138 XP_013414077.1 radial spoke head protein 6 homolog A-like [Lingula anatina] diamond 273 74.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32809963 32809963 PRJNA335774_P_NODE_37400_length_256_cov_2.289617_g37248_i0 PRJNA335774 37400 256 2.289617 5.86141952 Metazoa 33208 Brachiopoda other_Eukaryota 80.1 3.18e-15   NR XP_013393954.1 7574 g37248 i0 63.8 2.7421875 58 21 68 0 82 255 950 1007 XP_013393954.1 vigilin [Lingula anatina] diamond 702 80.1 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;