RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA335774", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA335774 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27106086 27106086 PRJNA335774_P_NODE_19962_length_342_cov_3.237918_g19810_i0 PRJNA335774 19962 342 3.237918 11.07367956 Paraphysoderma sedebokerense 1500003 Fungi Fungi 130 7.999999999999999e-37   NR KAI9146259.1 1500003 g19810 i0 61.2 1.85087719298246 103 40 90.4 0 10 318 6 108 KAI9146259.1 60S ribosomal protein l35a [Paraphysoderma sedebokerense] diamond 633 130 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
29506081 29506081 PRJNA335774_P_NODE_33150_length_274_cov_1.149254_g32998_i0 PRJNA335774 33150 274 1.149254 3.14895596 Paraphysoderma sedebokerense 1500003 Fungi Fungi 133 5.81e-35   NR KAI9140522.1 1500003 g32998 i0 68.9 21.2189781021898 90 28 98.5 0 270 1 205 294 KAI9140522.1 hypothetical protein BKA69DRAFT_1029354 [Paraphysoderma sedebokerense] diamond 5814 133 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
31370484 31370484 PRJNA335774_P_NODE_39716_length_250_cov_1.237288_g39564_i0 PRJNA335774 39716 250 1.237288 3.09322 Paraphysoderma sedebokerense 1500003 Fungi Fungi 102 3e-23   NR KAI9137238.1 1500003 g39564 i0 58 1.956 81 34 97.2 0 250 8 225 305 KAI9137238.1 Transketolase, thiamine diphosphate binding domain-containing protein [Paraphysoderma sedebokerense] diamond 489 102 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;