RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA335774", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 13 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 13 ✖

bioproject 1

  • PRJNA335774 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18241905 18241905 PRJNA335774_P_NODE_24955_length_312_cov_1.581590_g24803_i0 PRJNA335774 24955 312 1.58159 4.9345608 Haloferula luteola 595692 Bacteria Bacteria 148 2.75e-41   NR WP_184015289.1 595692 g24803 i0 72.8 20.7884615384615 103 28 99 0 2 310 159 261 WP_184015289.1 transaldolase [Haloferula luteola] diamond 6486 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula luteola
25295772 25295772 PRJNA335774_P_NODE_19620_length_345_cov_1.132353_g19468_i0 PRJNA335774 19620 345 1.132353 3.90661785 Verrucomicrobiota 74201 Bacteria Bacteria 505 2.08e-138   NTclustered gi|2874253952|emb|OY970277.1| 412056 g19468 i0 93.043 223.76231884058 345 24 100 0 1 345 2749927 2750271 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 77198 505 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
26947955 26947955 PRJNA335774_P_NODE_13422_length_404_cov_1.773414_g13270_i0 PRJNA335774 13422 404 1.773414 7.16459256 Roseibacillus persicicus 454148 Bacteria Bacteria 51.6 1.79e-4   NR WP_308988555.1 454148 g13270 i0 45.2 1.38118811881188 62 31 46 1 188 3 86 144 WP_308988555.1 family 16 glycoside hydrolase [Roseibacillus persicicus] diamond 558 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus persicicus
28527612 28527612 PRJNA335774_P_NODE_48547_length_241_cov_0.904762_g48395_i0 PRJNA335774 48547 241 0.904762 2.18047642 Opitutia bacterium 2026771 Bacteria Bacteria 43.1 0.0265   NR MBI5382792.1 2026771 g48395 i0 36.1 0.759336099585062 61 31 75.9 1 193 11 385 437 MBI5382792.1 DegQ family serine endoprotease [Opitutia bacterium] diamond 183 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29902486 29902486 PRJNA335774_P_NODE_47251_length_242_cov_0.911243_g47099_i0 PRJNA335774 47251 242 0.911243 2.20520806 Rariglobus 2706524 Bacteria Bacteria 43.1 0.0222   NR HNC24174.1 2006848 g47099 i0 48.9 2.10743801652893 45 23 55.8 0 239 105 177 221 HNC24174.1 hypothetical protein [Opitutaceae bacterium] diamond 510 43.5 0.990804597701149 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29916857 29916857 PRJNA335774_P_NODE_42591_length_247_cov_0.885057_g42439_i0 PRJNA335774 42591 247 0.885057 2.18609079 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.2 2.51e-9   NR MES2706561.1 2026799 g42439 i0 48.4 1.76113360323887 64 32 76.5 1 53 241 284 347 MES2706561.1 acyltransferase family protein [Verrucomicrobiota bacterium] diamond 435 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30485433 30485433 PRJNA335774_P_NODE_31133_length_282_cov_2.057416_g30981_i0 PRJNA335774 31133 282 2.057416 5.80191312 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 68.9 1.56e-11   NR MEI7807594.1 2026799 g30981 i0 50 0.680851063829787 64 32 68.1 0 275 84 160 223 MEI7807594.1 ADP-ribosylglycohydrolase family protein [Verrucomicrobiota bacterium] diamond 192 68.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30959397 30959397 PRJNA335774_P_NODE_8874_length_483_cov_1.200000_g8722_i0 PRJNA335774 8874 483 1.2 5.796 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 59.7 3.59e-7   NR MEI8386764.1 2026799 g8722 i0 36.4 0.732919254658385 118 63 72 3 7 354 141 248 MEI8386764.1 alpha/beta hydrolase [Verrucomicrobiota bacterium] diamond 354 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31560227 31560227 PRJNA335774_P_NODE_7896_length_507_cov_1.039171_g7744_i0 PRJNA335774 7896 507 1.039171 5.26859697 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.1 0.00616   NR MEI8043114.1 2026799 g7744 i0 25.6 0.739644970414201 125 71 72.8 3 393 25 284 388 MEI8043114.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 375 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31907918 31907918 PRJNA335774_P_NODE_15057_length_385_cov_1.176282_g14905_i0 PRJNA335774 15057 385 1.176282 4.5286857 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 70.1 1.61e-11   NR HEU6448320.1 2499141 g14905 i0 60.4 0.412987012987013 53 20 41.3 1 1 159 192 243 HEU6448320.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 159 70.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32129648 32129648 PRJNA335774_P_NODE_44218_length_245_cov_1.389535_g44066_i0 PRJNA335774 44218 245 1.389535 3.40436075 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 90.5 5.63e-19   NR RME94189.1 2026799 g44066 i0 60.3 1.70204081632653 68 27 83.3 0 226 23 479 546 RME94189.1 MAG: beta-N-acetylglucosaminidase [Verrucomicrobiota bacterium] diamond 417 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32161270 32161270 PRJNA335774_P_NODE_25638_length_308_cov_1.672340_g25486_i0 PRJNA335774 25638 308 1.67234 5.1508072 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 109 3.3399999999999997e-25   NR MEC8927643.1 2026799 g25486 i0 59.6 3.56493506493507 89 31 81.8 1 252 1 40 128 MEC8927643.1 protease inhibitor I42 family protein [Verrucomicrobiota bacterium] diamond 1098 109 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32761288 32761288 PRJNA335774_P_NODE_4980_length_618_cov_1.251376_g4835_i0 PRJNA335774 4980 618 1.251376 7.73350368 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 128 1.85e-30   NR HXI84029.1 2499141 g4835 i0 54.5 0.650485436893204 134 54 64.1 4 616 221 162 290 HXI84029.1 NF038122 family metalloprotease [Verrucomicrobiia bacterium] diamond 402 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;