RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA335774", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA335774 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27218111 27218111 PRJNA335774_P_NODE_44542_length_245_cov_0.895349_g44390_i0 PRJNA335774 44542 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 70.1 8.44e-12   NR PIS18240.1 1974533 g44390 i0 56.6 1.77551020408163 76 30 91.8 2 19 243 256 329 PIS18240.1 MAG: hypothetical protein COT54_00305 [Candidatus Collierbacteria bacterium CG09_land_8_20_14_0_10_46_12] diamond 435 70.5 0.994326241134752 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium CG09_land_8_20_14_0_10_46_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;