RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA330616" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2940503 2940503 PRJNA330616_P_NODE_5003_length_378_cov_2.325228_g4594_i0 PRJNA330616 5003 378 2.325228 8.78936184 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 688 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g4594 i0 99.471 26.6243386243386 378 2 100 0 1 378 1214 1591 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10064 688 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5493126 5493126 PRJNA330616_P_NODE_1665_length_705_cov_22.914634_g1298_i0 PRJNA330616 1665 705 22.914634 161.5481697 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 357 1.33e-93   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1298 i0 80.658 33.4567375886525 486 72 68 20 152 629 472 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 23587 357 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
10593281 10593281 PRJNA330616_P_NODE_15889_length_210_cov_1.267081_g15480_i0 PRJNA330616 15889 210 1.267081 2.6608701 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 366 5.7900000000000005e-97   NTclustered gi|292559443|ref|NC_013986.1| 5778 g15480 i0 98.095 86.5666666666667 210 4 100 0 1 210 19499 19290 Hartmannella vermiformis mitochondrion, complete genome blastn 18179 366 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13143410 13143410 PRJNA330616_P_NODE_5771_length_349_cov_3.393333_g5362_i0 PRJNA330616 5771 349 3.393333 11.84273217 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 612 1.21e-170   NTclustered gi|909719645|gb|KT185625.1| 5778 g5362 i0 98.555 24.6848137535817 346 5 99 0 4 349 7086 6741 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8615 612 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15097168 15097168 PRJNA330616_P_NODE_20232_length_187_cov_2.768116_g19823_i0 PRJNA330616 20232 187 2.768116 5.17637692 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 335 1.4199999999999996e-87   NTclustered gi|300078496|gb|GU001158.1| 5778 g19823 i0 98.93 6.20855614973262 187 2 100 0 1 187 1144 958 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1161 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;