RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA330616" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389647 389647 PRJNA330616_P_NODE_19041_length_193_cov_1.416667_g18632_i0 PRJNA330616 19041 193 1.416667 2.73416731 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 340 3.17e-89   NTclustered gi|68479954|gb|DQ076149.1| 6182 g18632 i0 98.446 1 193 3 100 0 1 193 199 391 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 193 340 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6767512 6767512 PRJNA330616_P_NODE_8226_length_289_cov_2.300000_g7817_i0 PRJNA330616 8226 289 2.3 6.647 Bresslauilla relicta 1311963 Platyhelminthes Platyhelminthes 86.1 2.64e-12   NTclustered gi|588313927|gb|KC869885.1| 1311963 g7817 i0 81.081 0.581314878892734 111 17 38 2 113 223 1712 1606 Bresslauilla relicta 28S ribosomal RNA genes, partial sequence blastn 168 86.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Graffillidae Bresslauilla Bresslauilla relicta
26757955 26757955 PRJNA330616_P_NODE_12021_length_238_cov_2.481481_g11612_i0 PRJNA330616 12021 238 2.481481 5.90592478 Heterobilharzia americana 39320 Platyhelminthes Platyhelminthes 45.8 1.94e-4   NR CAH8478127.1 39320 g11612 i0 51.2 0.542016806722689 43 21 54.2 0 200 72 10 52 CAH8478127.1 unnamed protein product [Heterobilharzia americana] diamond 129 45.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Heterobilharzia Heterobilharzia americana
30137395 30137395 PRJNA330616_P_NODE_12772_length_232_cov_1.098361_g12363_i0 PRJNA330616 12772 232 1.098361 2.54819752 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 52 1.75e-5   NR PAA86220.1 282301 g12363 i0 35.1 1.99137931034483 77 49 98.3 1 228 1 138 214 PAA86220.1 hypothetical protein BOX15_Mlig009159g3 [Macrostomum lignano] diamond 462 52 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
32652258 32652258 PRJNA330616_P_NODE_13460_length_226_cov_2.005650_g13051_i0 PRJNA330616 13460 226 2.00565 4.532769 Cyclophyllidea 6201 Platyhelminthes Platyhelminthes 62.8 1.03e-10   NR XP_024348860.1 6210 g13051 i0 51.7 1.53982300884956 60 28 78.3 1 221 45 40 99 XP_024348860.1 40S ribosomal protein S27 [Echinococcus granulosus] diamond 348 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
32683908 32683908 PRJNA330616_P_NODE_29760_length_163_cov_0.894737_g29351_i0 PRJNA330616 29760 163 0.894737 1.45842131 Cestoda 6199 Platyhelminthes Platyhelminthes 46.6 5.6e-4   NR VUZ43875.1 6216 g29351 i0 46.9 4.67484662576687 49 25 88.3 1 145 2 341 389 VUZ43875.1 unnamed protein product [Hymenolepis diminuta] diamond 762 46.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Hymenolepididae Hymenolepis Hymenolepis diminuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;