RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA330616" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389813 389813 PRJNA330616_P_NODE_30521_length_162_cov_4.106195_g30112_i0 PRJNA330616 30521 162 4.106195 6.6520359 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 300 4.36e-77   NTclustered gi|971146634|emb|LN879502.1| 389348 g30112 i0 100 173.555555555556 162 0 100 0 1 162 1251959 1251798 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 28116 300 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
2344738 2344738 PRJNA330616_P_NODE_4622_length_394_cov_3.237681_g4213_i0 PRJNA330616 4622 394 3.237681 12.75646314 Candidatus Protochlamydia 282132 Bacteria Bacteria 590 6.459999999999999e-164   NTclustered gi|1691252667|emb|BX908798.2| 264201 g4213 i0 93.671 174.225888324873 395 23 100 2 1 394 1249056 1249449 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 68645 595 0.991596638655462 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
13143172 13143172 PRJNA330616_P_NODE_18891_length_194_cov_1.055172_g18482_i0 PRJNA330616 18891 194 1.055172 2.04703368 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 226 9.319999999999998e-55   NTclustered gi|2874253712|emb|OY969554.1| 174324 g18482 i0 87.629 189.530927835052 194 24 100 0 1 194 1826595 1826402 MAG: uncultured Chlamydiales bacterium isolate MFD04540.bin.c.3 genome assembly, chromosome: 1 blastn 36769 226 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
18241367 18241367 PRJNA330616_P_NODE_27315_length_165_cov_3.870690_g26906_i0 PRJNA330616 27315 165 3.87069 6.3866385 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 305 9.59e-79   NTclustered gi|971146634|emb|LN879502.1| 389348 g26906 i0 100 11.0363636363636 165 0 100 0 1 165 1251368 1251204 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 1821 305 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
19515577 19515577 PRJNA330616_P_NODE_24456_length_171_cov_1.155738_g24047_i0 PRJNA330616 24456 171 1.155738 1.97631198 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 176 8.149999999999999e-40   NTclustered gi|2874253811|emb|OY969795.1| 464461 g24047 i0 85.629 186.374269005848 167 24 98 0 1 167 653887 653721 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 31870 176 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
20791244 20791244 PRJNA330616_P_NODE_297_length_1711_cov_4.143201_g124_i1 PRJNA330616 297 1711 4.143201 70.89016911 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 2878 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g124 i1 98.471 111.189947399182 1635 21 95 4 1 1633 1251045 1249413 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 190246 2878 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
24021268 24021268 PRJNA330616_P_NODE_5359_length_363_cov_3.012739_g4950_i0 PRJNA330616 5359 363 3.012739 10.93624257 Candidatus Protochlamydia 282132 Bacteria Bacteria 671 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g4950 i0 100 111.787878787879 363 0 100 0 1 363 1247172 1247534 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 40579 671 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;