contig_metadata
10 rows where bioproject = "PRJNA330616", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5493394 | 5493394 | PRJNA330616_P_NODE_3925_length_433_cov_2.270833_g3518_i0 | PRJNA330616 | 3925 | 433 | 2.270833 | 9.83270689 | Geopsychrobacteraceae bacterium | 3065857 | Bacteria | Bacteria | 108 | 8.8e-19 | NTclustered | gi|2621701823|emb|OY759353.1| | 3065857 | g3518 | i0 | 91.25 | 1.04387990762125 | 80 | 5 | 18 | 2 | 19 | 97 | 2088524 | 2088446 | MAG: Geopsychrobacteraceae bacterium isolate b20cad9c-d1d2-40c5-8f7b-178437520c26 genome assembly, chromosome: 1 | blastn | 452 | 108 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Geopsychrobacteraceae | Geopsychrobacteraceae bacterium | |||
| 10593361 | 10593361 | PRJNA330616_P_NODE_21049_length_184_cov_1.511111_g20640_i0 | PRJNA330616 | 21049 | 184 | 1.511111 | 2.78044424 | Salidesulfovibrio onnuriiensis | 2583823 | Bacteria | Bacteria | 52.8 | 0.016 | NTclustered | gi|1725298512|gb|CP040751.1| | 2583823 | g20640 | i0 | 100 | 0.152173913043478 | 28 | 0 | 15 | 0 | 107 | 134 | 1574414 | 1574387 | Salidesulfovibrio onnuriiensis strain IOR2 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Salidesulfovibrio | Salidesulfovibrio onnuriiensis | ||
| 11868205 | 11868205 | PRJNA330616_P_NODE_16090_length_209_cov_0.906250_g15681_i0 | PRJNA330616 | 16090 | 209 | 0.90625 | 1.8940625 | Desulfovibrio fairfieldensis | 44742 | Bacteria | Bacteria | 342 | 9.709999999999999e-90 | NTclustered | gi|987453195|gb|CP014229.1| | 44742 | g15681 | i0 | 96.19 | 110.368421052632 | 210 | 6 | 100 | 2 | 1 | 209 | 165600 | 165392 | Desulfovibrio fairfieldensis strain CCUG 45958 chromosome, complete genome | blastn | 23067 | 342 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio fairfieldensis | ||
| 14418524 | 14418524 | PRJNA330616_P_NODE_24792_length_169_cov_1.758333_g24383_i0 | PRJNA330616 | 24792 | 169 | 1.758333 | 2.97158277 | Desulfopila sp. IMCC35008 | 2653858 | Bacteria | Bacteria | 141 | 2.93e-29 | NTclustered | gi|2557433592|gb|CP050700.1| | 2653858 | g24383 | i0 | 85 | 124.023668639053 | 140 | 20 | 84 | 1 | 15 | 153 | 465464 | 465325 | Desulfopila sp. IMCC35008 chromosome, complete genome | blastn | 20960 | 141 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfocapsaceae | Desulfopila | Desulfopila sp. IMCC35008 | ||
| 27787043 | 27787043 | PRJNA330616_P_NODE_8524_length_284_cov_1.302128_g8115_i0 | PRJNA330616 | 8524 | 284 | 1.302128 | 3.69804352 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 119 | 8.41e-31 | NR | MEN8782234.1 | 2044940 | g8115 | i0 | 70.1 | 3.83450704225352 | 87 | 25 | 91.9 | 1 | 263 | 3 | 45 | 130 | MEN8782234.1 carbonic anhydrase family protein [Desulfobacterales bacterium] | diamond | 1089 | 120 | 0.991666666666667 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfobacterales bacterium | ||||
| 27801259 | 27801259 | PRJNA330616_P_NODE_30364_length_163_cov_0.894737_g29955_i0 | PRJNA330616 | 30364 | 163 | 0.894737 | 1.45842131 | Desulfobulbaceae bacterium | 2053307 | Bacteria | Bacteria | 65.1 | 1.56e-10 | NR | NLZ17799.1 | 2053307 | g29955 | i0 | 58.5 | 6.57055214723926 | 53 | 22 | 97.5 | 0 | 161 | 3 | 21 | 73 | NLZ17799.1 DEAD/DEAH box helicase [Desulfobulbaceae bacterium] | diamond | 1071 | 65.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbaceae bacterium | |||
| 28401035 | 28401035 | PRJNA330616_P_NODE_26126_length_167_cov_0.864407_g25717_i0 | PRJNA330616 | 26126 | 167 | 0.864407 | 1.44355969 | Thermodesulfobacteriota bacterium | 2202153 | Bacteria | Bacteria | 46.6 | 1.88e-4 | NR | GJM17742.1 | 2202153 | g25717 | i0 | 47.3 | 0.988023952095808 | 55 | 22 | 98.8 | 1 | 167 | 3 | 1 | 48 | GJM17742.1 MAG: hypothetical protein DHS20C13_30690 [Thermodesulfobacteriota bacterium] | diamond | 165 | 46.6 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteriota bacterium | ||||||
| 29081465 | 29081465 | PRJNA330616_P_NODE_14048_length_222_cov_1.242775_g13639_i0 | PRJNA330616 | 14048 | 222 | 1.242775 | 2.7589605 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 116 | 3.41e-30 | NR | OQX09806.1 | 1934250 | g13639 | i0 | 70.3 | 6 | 74 | 21 | 98.6 | 1 | 220 | 2 | 176 | 249 | OQX09806.1 MAG: cephalosporin hydroxylase [Desulfobulbaceae bacterium A2] | diamond | 1332 | 116 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbaceae bacterium A2 | |||
| 29885226 | 29885226 | PRJNA330616_P_NODE_29511_length_163_cov_1.789474_g29102_i0 | PRJNA330616 | 29511 | 163 | 1.789474 | 2.91684262 | Syntrophaceae bacterium | 2052184 | Bacteria | Bacteria | 65.1 | 8.19e-11 | NR | MCG2741802.1 | 2052184 | g29102 | i0 | 57.4 | 1.98773006134969 | 54 | 21 | 99.4 | 1 | 1 | 162 | 5 | 56 | MCG2741802.1 TIGR04255 family protein [Syntrophaceae bacterium] | diamond | 324 | 65.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophia | Syntrophales | Syntrophaceae | Syntrophaceae bacterium | |||
| 32747000 | 32747000 | PRJNA330616_P_NODE_17620_length_200_cov_1.350993_g17211_i0 | PRJNA330616 | 17620 | 200 | 1.350993 | 2.701986 | Desulfovibrionaceae | 194924 | Bacteria | Bacteria | 73.6 | 1.85e-13 | NR | WP_304088471.1 | 246191 | g17211 | i0 | 56.3 | 1.95 | 64 | 28 | 96 | 0 | 3 | 194 | 57 | 120 | WP_304088471.1 N4-gp56 family major capsid protein [Maridesulfovibrio ferrireducens] | diamond | 390 | 73.6 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Maridesulfovibrio | Maridesulfovibrio ferrireducens |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;