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contig_metadata

10 rows where bioproject = "PRJNA330616", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3620160 3620160 PRJNA330616_P_NODE_5683_length_352_cov_1.937294_g5274_i0 PRJNA330616 5683 352 1.937294 6.81927488 Ironus 211205 Nematoda Nematoda 207 6.71e-49   NTclustered gi|68271495|gb|DQ086676.1| 554024 g5274 i0 83.482 57.46875 224 35 63 2 106 327 175 398 Uncultured nematode isolate NEMATD17 large subunit ribosomal RNA gene, partial sequence blastn 20229 207 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
11868242 11868242 PRJNA330616_P_NODE_17610_length_200_cov_1.350993_g17201_i0 PRJNA330616 17610 200 1.350993 2.701986 Ancylostoma duodenale 51022 Nematoda Nematoda 161 2.77e-35   NTclustered gi|66734013|gb|DQ055415.1| 51022 g17201 i0 81.538 53.43 195 36 98 0 6 200 1239 1045 Ancylostoma duodenale beta-tubulin mRNA, complete cds blastn 10686 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
13143346 13143346 PRJNA330616_P_NODE_31531_length_162_cov_0.902655_g31122_i0 PRJNA330616 31531 162 0.902655 1.4623011 Caenorhabditis elegans 6239 Nematoda Nematoda 102 1.32e-17   NTclustered gi|1972257304|ref|NM_064671.9| 6239 g31122 i0 82.609 4.24074074074074 115 20 71 0 9 123 190 76 Caenorhabditis elegans Ribosomal protein L37 (rpl-37.1), partial mRNA blastn 687 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18920932 18920932 PRJNA330616_P_NODE_5155_length_372_cov_1.879257_g4746_i0 PRJNA330616 5155 372 1.879257 6.99083604 Opisthokonta 33154 Nematoda Nematoda 274 6.94e-69   NTclustered gi|1376156759|ref|XM_024645793.1| 34506 g4746 i0 82.099 87.1182795698925 324 54 86 4 1 321 355 33 Strongyloides ratti Ras-like protein 3 (SRAE_X000250800), partial mRNA blastn 32408 274 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20791377 20791377 PRJNA330616_P_NODE_8697_length_281_cov_1.775862_g8288_i0 PRJNA330616 8697 281 1.775862 4.99017222 Caenorhabditis briggsae 6238 Nematoda Nematoda 211 4.04e-50   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g8288 i0 92.053 55.864768683274 151 10 53 2 131 280 1307 1158 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 15698 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28702637 28702637 PRJNA330616_P_NODE_27927_length_165_cov_0.879310_g27518_i0 PRJNA330616 27927 165 0.87931 1.4508615 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.9 3.58e-13   NR VDO78519.1 241478 g27518 i0 53.6 12.2545454545455 56 24 98.2 1 165 4 63 118 VDO78519.1 unnamed protein product [Soboliphyme baturini] diamond 2022 68.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
29491822 29491822 PRJNA330616_P_NODE_13950_length_223_cov_1.172414_g13541_i0 PRJNA330616 13950 223 1.172414 2.61448322 Metazoa 33208 Nematoda Nematoda 49.7 1.07e-4   NR KAI3420146.1 36090 g13541 i0 42.6 5.34080717488789 54 31 72.6 0 5 166 705 758 KAI3420146.1 hypothetical protein GPALN_003468 [Globodera pallida] diamond 1191 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
31292541 31292541 PRJNA330616_P_NODE_33155_length_151_cov_3.500000_g32746_i0 PRJNA330616 33155 151 3.5 5.285 Metazoa 33208 Nematoda Nematoda 87.4 2.21e-19   NR CAD5209926.1 6326 g32746 i0 70.8 5.74172185430464 48 14 95.4 0 3 146 2 49 CAD5209926.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 867 88.2 0.99092970521542 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32129589 32129589 PRJNA330616_P_NODE_20438_length_187_cov_0.775362_g20029_i0 PRJNA330616 20438 187 0.775362 1.44992694 Oigolaimella sp. VS-2 1538701 Nematoda Nematoda 98.6 4.8199999999999996e-24   NR AIL48349.1 1538701 g20029 i0 73 6.03208556149733 63 16 99.5 1 2 187 52 114 AIL48349.1 large subunit ribosomal protein 9, partial [Oigolaimella sp. VS-2014] diamond 1128 98.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella sp. VS-2014
32620991 32620991 PRJNA330616_P_NODE_25960_length_167_cov_0.864407_g25551_i0 PRJNA330616 25960 167 0.864407 1.44355969 Opisthokonta 33154 Nematoda Nematoda 43.9 0.00402   NR NP_490749.1 6239 g25551 i0 65.5 9.32335329341317 29 10 52.1 0 162 76 102 130 NP_490749.1 Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans] diamond 1557 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;