RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA330616", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA330616 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493179 5493179 PRJNA330616_P_NODE_19385_length_191_cov_1.795775_g18976_i0 PRJNA330616 19385 191 1.795775 3.42993025 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 150 5.66e-32   NTclustered gi|2874254000|emb|OY970325.1| 157466 g18976 i0 81.026 131.204188481675 195 31 100 5 1 191 1304700 1304508 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 25060 150 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
12548037 12548037 PRJNA330616_P_NODE_9470_length_270_cov_1.153846_g9061_i0 PRJNA330616 9470 270 1.153846 3.1153842 Fimbriimonas 1005038 Bacteria Bacteria 298 2.88e-76   NTclustered gi|663071213|gb|CP007139.1| 661478 g9061 i0 86.716 99.8777777777778 271 33 100 2 1 270 28544 28276 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 26967 298 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
14418597 14418597 PRJNA330616_P_NODE_29552_length_163_cov_1.780702_g29143_i0 PRJNA330616 29552 163 1.780702 2.90254426 Armatimonadota bacterium 2033014 Bacteria Bacteria 113 6.14e-21   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g29143 i0 86.538 1.92638036809816 104 12 63 2 1 103 2410108 2410210 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 314 113 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;