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contig_metadata

5 rows where bioproject = "PRJNA330616", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA330616 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4216805 4216805 PRJNA330616_P_NODE_11784_length_241_cov_1.416667_g11375_i0 PRJNA330616 11784 241 1.416667 3.41416747 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 265 2.5599999999999996e-66   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g11375 i0 89.474 306.883817427386 209 22 87 0 1 209 1595179 1595387 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 73959 265 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
4217047 4217047 PRJNA330616_P_NODE_29564_length_163_cov_1.754386_g29155_i0 PRJNA330616 29564 163 1.754386 2.85964918 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 154 3.62e-33   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g29155 i0 91.818 173.521472392638 110 9 67 0 54 163 1594069 1593960 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 28284 154 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
10593536 10593536 PRJNA330616_P_NODE_3969_length_430_cov_2.396325_g3562_i0 PRJNA330616 3969 430 2.396325 10.3041975 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 366 1.2999999999999999e-96   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g3562 i0 86.726 125.397674418605 339 34 77 7 100 430 1595520 1595855 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 53921 366 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
19515418 19515418 PRJNA330616_P_NODE_1456_length_768_cov_2.165508_g1105_i0 PRJNA330616 1456 768 2.165508 16.63110144 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 1024 0   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g1105 i0 90.791 208.213541666667 771 64 100 6 1 768 1595190 1594424 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 159908 1024 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
20791230 20791230 PRJNA330616_P_NODE_28977_length_164_cov_0.886957_g28568_i0 PRJNA330616 28977 164 0.886957 1.45460948 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 215 1.65e-51   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g28568 i0 90.244 288.036585365854 164 16 100 0 1 164 1594725 1594562 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 47238 215 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;