RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA330616", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA330616 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31528456 31528456 PRJNA330616_P_NODE_18956_length_193_cov_2.069444_g18547_i0 PRJNA330616 18956 193 2.069444 3.99402692 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 43.1 0.0131   NR MCA9388389.1 2053521 g18547 i0 45.5 0.683937823834197 44 24 68.4 0 186 55 181 224 MCA9388389.1 30S ribosomal protein S3 [Candidatus Berkelbacteria bacterium] diamond 132 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;