RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA330616", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA330616 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7447207 7447207 PRJNA330616_P_NODE_21066_length_184_cov_1.511111_g20657_i0 PRJNA330616 21066 184 1.511111 2.78044424 Planopodium 2823620 Discosea other_Eukaryota 340 2.99e-89   NTclustered gi|330902850|gb|JF298244.1| 2773111 g20657 i0 100 62.6467391304348 184 0 100 0 1 184 990 807 Ovalopodium desertum clone 3702 18S ribosomal RNA gene, partial sequence blastn 11527 340 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
8721896 8721896 PRJNA330616_P_NODE_2147_length_617_cov_2.813380_g1754_i0 PRJNA330616 2147 617 2.81338 17.3585546 Acanthamoeba 5754 Discosea other_Eukaryota 130 2.75e-25   NTclustered gi|28194602|gb|AF479546.1| 65658 g1754 i0 76.735 10.6385737439222 245 49 39 7 195 435 922 682 Acanthamoeba astronyxis strain ATCC 30137 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 6564 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba astronyxis
10593453 10593453 PRJNA330616_P_NODE_27489_length_165_cov_1.318966_g27080_i0 PRJNA330616 27489 165 1.318966 2.1762939 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 244 2.12e-60   NTclustered gi|330902858|gb|JF298255.1| 1017091 g27080 i0 93.976 13.6666666666667 166 3 100 5 1 165 762 921 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 2255 244 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
22746260 22746260 PRJNA330616_P_NODE_24478_length_170_cov_29.809917_g24069_i0 PRJNA330616 24478 170 29.809917 50.6768589 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 8.32e-20   NTclustered gi|62865955|gb|AY929930.1| 325074 g24069 i0 91.358 49.2235294117647 81 6 47 1 69 148 305 225 Vannella sp. strain 4354/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 8368 110 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
24615760 24615760 PRJNA330616_P_NODE_20860_length_185_cov_1.463235_g20451_i0 PRJNA330616 20860 185 1.463235 2.70698475 Platyamoeba placida 3454475 Discosea other_Eukaryota 263 6.7e-66   NTclustered gi|33946348|gb|AY294153.1| 197527 g20451 i0 92.391 99.5243243243243 184 14 99 0 2 185 137 320 Platyamoeba placida actin mRNA, partial cds blastn 18412 263 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
27516980 27516980 PRJNA330616_P_NODE_26763_length_166_cov_0.871795_g26354_i0 PRJNA330616 26763 166 0.871795 1.4471797 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 7.12e-5   NR XP_004351555.1 1257118 g26354 i0 45.3 0.957831325301205 53 29 95.8 0 3 161 67 119 XP_004351555.1 LSM domain containing protein [Acanthamoeba castellanii str. Neff] diamond 159 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;