RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA326068" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA326068 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389442 389442 PRJNA326068_P_NODE_2121_length_744_cov_16.604196_g1603_i0 PRJNA326068 2121 744 16.604196 123.53521824 Rosculus vulgaris 2231165 SAR_Eukaryotes SAR_Eukaryotes 547 7.8e-151   NTclustered gi|1402550474|gb|MH488760.1| 2231165 g1603 i0 87.949 27.883064516129 473 46 63 11 1 471 2273 2736 Rosculus vulgaris isolate CCA sequence blastn 20745 547 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus vulgaris
1664128 1664128 PRJNA326068_P_NODE_142_length_2075_cov_7.920821_g82_i0 PRJNA326068 142 2075 7.920821 164.35703575 Rosculus incognitus 2231162 SAR_Eukaryotes SAR_Eukaryotes 3182 0   NTclustered gi|1402550483|gb|MH488769.1| 2231162 g82 i0 94.351 32.8390361445783 2089 94 100 20 1 2075 2095 17 Rosculus incognitus isolate ATCC 50577 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 68141 3182 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus incognitus
2344479 2344479 PRJNA326068_P_NODE_6782_length_414_cov_71.387013_g5862_i0 PRJNA326068 6782 414 71.387013 295.54223382 Heteromita 45106 SAR_Eukaryotes SAR_Eukaryotes 743 0   NTclustered gi|46393899|gb|AY496043.1| 45107 g5862 i0 99.034 100.01690821256 414 4 100 0 1 414 823 410 Heteromita globosa strain SCCAP H251 small subunit ribosomal RNA gene, partial sequence blastn 41407 743 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
16966782 16966782 PRJNA326068_P_NODE_18534_length_171_cov_31.619718_g17571_i0 PRJNA326068 18534 171 31.619718 54.06971778 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 224 2.869999999999999e-54   NTclustered gi|238617605|gb|FJ973380.1| 45107 g17571 i0 90 26.8421052631579 180 9 100 5 1 171 1881 1702 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 4590 224 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
28228636 28228636 PRJNA326068_P_NODE_19306_length_160_cov_2.519084_g18343_i0 PRJNA326068 19306 160 2.519084 4.0305344 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.8 5.61e-20   NR MES1915218.1 1215613 g18343 i0 75 5.00625 52 13 97.5 0 4 159 98 149 MES1915218.1 60S ribosomal protein L18B [Cercozoa sp. M6MM] diamond 801 87.8 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;