RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA326068", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA326068 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29284954 29284954 PRJNA326068_P_NODE_13349_length_245_cov_2.018519_g12386_i0 PRJNA326068 13349 245 2.018519 4.94537155 Dirofilaria immitis 6287 Nematoda Nematoda 49.3 9.98e-5   NR MCP9259222.1 6287 g12386 i0 66.7 0.808163265306122 33 11 40.4 0 122 220 92 124 MCP9259222.1 putative serine acetyltransferase [Dirofilaria immitis] diamond 198 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
30345212 30345212 PRJNA326068_P_NODE_17712_length_186_cov_1.605096_g16749_i0 PRJNA326068 17712 186 1.605096 2.98547856 Caenorhabditis 6237 Nematoda Nematoda 85.9 1.56e-19   NR NP_001379167.1 6239 g16749 i0 67.9 2.56451612903226 53 17 85.5 0 160 2 1 53 NP_001379167.1 Small ribosomal subunit protein uS9 [Caenorhabditis elegans] diamond 477 85.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;