RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA326068", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA326068 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389418 389418 PRJNA326068_P_NODE_11801_length_275_cov_6.012195_g10839_i0 PRJNA326068 11801 275 6.012195 16.53353625 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 228 3.9099999999999994e-55   NTclustered gi|297180392|gb|GU474842.1| 710820 g10839 i0 81.884 152.472727272727 276 44 99 5 1 274 14402 14673 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 41930 228 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
25295415 25295415 PRJNA326068_P_NODE_15240_length_217_cov_59.824468_g14277_i0 PRJNA326068 15240 217 59.824468 129.81909556 Myxococcota 2818505 Bacteria Bacteria 250 6.33e-62   NTclustered gi|927353648|gb|KT322182.1| 34034 g14277 i0 96.078 70.5990783410138 153 6 71 0 1 153 370 218 Uncultured delta proteobacterium clone TGR_WLFZ-2 16S ribosomal RNA gene, partial sequence blastn 15320 250 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;