RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA322517" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA322517 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30390989 30390989 PRJNA322517_P_NODE_1073_length_490_cov_2.269841_g1051_i0 PRJNA322517 1073 490 2.269841 11.1222209 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 64.3 1.4e-8   NR MEI7935980.1 2026799 g1051 i0 42 0.991836734693878 81 41 47.8 3 488 255 403 480 MEI7935980.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 486 64.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31306873 31306873 PRJNA322517_P_NODE_5735_length_165_cov_0.879310_g5713_i0 PRJNA322517 5735 165 0.87931 1.4508615 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 83.2 3.45e-17   NR RYD65414.1 2026800 g5713 i0 78.2 1 55 11 98.2 1 164 3 225 279 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 165 83.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32887023 32887023 PRJNA322517_P_NODE_4820_length_177_cov_3.234375_g4798_i0 PRJNA322517 4820 177 3.234375 5.72484375 Planctomycetia bacterium 2052181 Bacteria Bacteria 63.2 7.96e-10   NR HVJ79608.1 2052181 g4798 i0 60.4 0.898305084745763 53 20 89.8 1 174 16 259 310 HVJ79608.1 tetratricopeptide repeat protein [Planctomycetia bacterium] diamond 159 63.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;