RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA322517", tax_clade = "Opisthokonta" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA322517 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4896999 4896999 PRJNA322517_P_NODE_2024_length_341_cov_1.226027_g2002_i0 PRJNA322517 2024 341 1.226027 4.18075207 Ascomycota 4890 Fungi Fungi 89.8 2.46e-13   NTclustered gi|667671102|gb|KJ766671.1| 78073 g2002 i0 92.063 18.2521994134897 63 5 18 0 279 341 904 842 Tuckermannopsis chlorophylla isolate AFTOL-ID 4943 28S ribosomal RNA gene, partial sequence blastn 6224 89.8 1 Eukaryota Opisthokonta Fungi Ascomycota Lecanoromycetes Lecanorales Parmeliaceae Tuckermannopsis Tuckermannopsis chlorophylla
14418193 14418193 PRJNA322517_P_NODE_5892_length_164_cov_0.886957_g5870_i0 PRJNA322517 5892 164 0.886957 1.45460948 Kazachstania africana 432096 Fungi Fungi 121 3.7e-23   NTclustered gi|410078589|ref|XM_003956827.1| 1071382 g5870 i0 83.088 27.1463414634146 136 19 82 4 31 164 10 143 Kazachstania africana CBS 2517 actin (KAFR0D00940), partial mRNA blastn 4452 121 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Kazachstania Kazachstania africana
16371715 16371715 PRJNA322517_P_NODE_4993_length_174_cov_1.632000_g4971_i0 PRJNA322517 4993 174 1.632 2.83968 Botrytis 33196 Fungi Fungi 172 1.08e-38   NTclustered gi|5825978|emb|AL111359.1| 40559 g4971 i0 85.802 222.097701149425 162 23 93 0 13 174 14 175 Botrytis cinerea strain T4 cDNA library blastn 38645 172 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Botrytis Botrytis cinerea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;