RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA316313" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA316313 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25294646 25294646 PRJNA316313_P_NODE_446200_length_151_cov_3.745614_g444814_i0 PRJNA316313 446200 151 3.7456140000000002 5.65587714 Synergistes jonesii 2754 Bacteria Bacteria 102 7.26e-25   NR WP_051682803.1 2754 g444814 i0 83.3 1.19205298013245 60 0 99.3 1 151 2 105 164 WP_051682803.1 phosphate ABC transporter ATP-binding protein PstB [Synergistes jonesii] diamond 180 102 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistes Synergistes jonesii
27769727 27769727 PRJNA316313_P_NODE_288704_length_187_cov_2.506667_g287318_i0 PRJNA316313 288704 187 2.506667 4.68746729 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 52.8 4.92e-6   NR WP_299076282.1 1678694 g287318 i0 100 0.770053475935829 24 0 38.5 0 114 185 224 247 WP_299076282.1 NAD(P)/FAD-dependent oxidoreductase [uncultured Fretibacterium sp.] diamond 144 52.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;