RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA316313", tax_kingdom = "Metazoa" and tax_phylum = "Porifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA316313 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
386190 386190 PRJNA316313_P_NODE_136421_length_187_cov_5.613333_g135035_i0 PRJNA316313 136421 187 5.613333 10.49693271 Halichondria panicea 6063 Porifera other_Eukaryota 54.7 0.004   NTclustered gi|2719007547|ref|XR_010398144.1| 6063 g135035 i0 100 1.13903743315508 29 0 16 0 112 140 801 829 PREDICTED: Halichondria panicea uncharacterized LOC135346934 (LOC135346934), ncRNA blastn 213 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
6764581 6764581 PRJNA316313_P_NODE_270686_length_187_cov_2.600000_g269300_i0 PRJNA316313 270686 187 2.6 4.862 Halichondria panicea 6063 Porifera other_Eukaryota 54.7 0.004   NTclustered gi|2719005873|ref|XR_010396254.1| 6063 g269300 i0 100 0.155080213903743 29 0 16 0 143 171 370 342 PREDICTED: Halichondria panicea uncharacterized LOC135340210 (LOC135340210), ncRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
30913551 30913551 PRJNA316313_S_NODE_574_length_270_cov_1.824034_g571_i0 PRJNA316313 574 270 1.824034 4.9248918 root 1 Root_unresolved Root_unresolved 89 1.75e-19   NR XP_062509362.1 121492 g571 i0 67.9 6.22222222222222 56 18 62.2 0 97 264 26 81 XP_062509362.1 peroxiredoxin-2-like [Corticium candelabrum] diamond 1680 89.4 0.995525727069351 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Plakinidae Corticium Corticium candelabrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;