RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA316313", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA316313 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
387127 387127 PRJNA316313_P_NODE_306521_length_187_cov_2.386667_g305135_i0 PRJNA316313 306521 187 2.386667 4.46306729 Gomphonema parvulum 97227 SAR_Eukaryotes SAR_Eukaryotes 76.8 9.5e-10   NTclustered gi|2328365145|ref|NC_067847.1| 97227 g305135 i0 94 1.52406417112299 50 3 27 0 3 52 2408 2457 Gomphonema parvulum voucher personal collection:A.Bruce Cahoon:diatom-2021-A mitochondrion, complete genome blastn 285 76.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Gomphonemataceae Gomphonema Gomphonema parvulum
28559008 28559008 PRJNA316313_P_NODE_316887_length_187_cov_2.286667_g315501_i0 PRJNA316313 316887 187 2.286667 4.27606729 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00203   NR KAL3789508.1 29204 g315501 i0 81 1.01069518716578 21 4 33.7 0 112 174 590 610 KAL3789508.1 hypothetical protein HJC23_009744 [Cyclotella cryptica] diamond 189 45.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
29870751 29870751 PRJNA316313_P_NODE_336671_length_185_cov_5.263514_g335285_i0 PRJNA316313 336671 185 5.263514 9.7375009 Stephanodiscaceae 1365474 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.57e-4   NR KAL3817785.1 382380 g335285 i0 84 0.810810810810811 25 4 40.5 0 184 110 490 514 KAL3817785.1 hypothetical protein ACHAXA_005818 [Cyclostephanos tholiformis] diamond 150 48.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;