RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA316313", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA316313 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16965418 16965418 PRJNA316313_P_NODE_466874_length_151_cov_3.157895_g465488_i0 PRJNA316313 466874 151 3.157895 4.76842145 Metazoa 33208 Platyhelminthes Platyhelminthes 54.7 6.48e-7   NR THD21392.1 6192 g465488 i0 100 65.5827814569536 25 0 49.7 0 151 77 840 864 THD21392.1 DNA ligase [Fasciola hepatica] diamond 9903 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
24612274 24612274 PRJNA316313_P_NODE_117960_length_193_cov_3.397436_g116574_i0 PRJNA316313 117960 193 3.397436 6.55705148 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.017   NTclustered gi|687688392|emb|LK602674.1| 57078 g116574 i0 100 0.145077720207254 28 0 15 0 1 28 603 630 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0017416 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;