RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA316313", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 9 ✖

bioproject 1

  • PRJNA316313 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14417062 14417062 PRJNA316313_P_NODE_484372_length_150_cov_5.256637_g482986_i0 PRJNA316313 484372 150 5.256637 7.8849555 Caenorhabditis elegans 6239 Nematoda Nematoda 75 2.61e-9   NTclustered gi|3810720|emb|AL032641.1| 6239 g482986 i0 95.652 56.44 46 2 37 0 105 150 9331 9376 Caenorhabditis elegans YAC Y5F2A, complete sequence blastn 8466 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23339157 23339157 PRJNA316313_P_NODE_327079_length_187_cov_2.006667_g325693_i0 PRJNA316313 327079 187 2.006667 3.75246729 Caenorhabditis elegans 6239 Nematoda Nematoda 141 3.32e-29   NTclustered gi|687866032|emb|LK927877.1| 6239 g325693 i0 100 2.03208556149733 76 0 81 0 112 187 78254 78179 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000051 blastn 380 141 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24614939 24614939 PRJNA316313_S_NODE_400_length_314_cov_3.480144_g397_i0 PRJNA316313 400 314 3.480144 10.92765216 Strongyloides ratti 34506 Nematoda Nematoda 303 7.35e-78   NTclustered gi|1376144465|ref|XM_024652690.1| 34506 g397 i0 85.05 96.859872611465 301 41 95 4 7 305 330 32 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000170700), partial mRNA blastn 30414 303 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
27295782 27295782 PRJNA316313_P_NODE_313803_length_187_cov_2.326667_g312417_i0 PRJNA316313 313803 187 2.326667 4.35086729 Trichinella pseudospiralis 6337 Nematoda Nematoda 39.7 0.0385   NR KRY95212.1 6337 g312417 i0 70.8 0.385026737967914 24 7 38.5 0 5 76 36 59 KRY95212.1 hypothetical protein T4B_14678 [Trichinella pseudospiralis] diamond 72 39.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
29726844 29726844 PRJNA316313_P_NODE_428910_length_151_cov_4.438596_g427524_i0 PRJNA316313 428910 151 4.438596 6.70227996 Diploscapter pachys 2018661 Nematoda Nematoda 49.7 3.52e-5   NR PAV59139.1 2018661 g427524 i0 95.2 0.417218543046358 21 1 41.7 0 2 64 75 95 PAV59139.1 hypothetical protein WR25_10811 [Diploscapter pachys] diamond 63 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
31229140 31229140 PRJNA316313_P_NODE_496775_length_150_cov_3.761062_g495389_i0 PRJNA316313 496775 150 3.761062 5.641593 root 1 Root_unresolved Root_unresolved 50.4 4.1e-6   NR ETN78375.1 51031 g495389 i0 72.4 4.64 29 8 58 0 2 88 79 107 ETN78375.1 hypothetical protein NECAME_18222 [Necator americanus] diamond 696 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31528367 31528367 PRJNA316313_P_NODE_308796_length_187_cov_2.373333_g307410_i0 PRJNA316313 308796 187 2.373333 4.43813271 Mesorhabditis spiculigera 96644 Nematoda Nematoda 43.9 0.00672   NR CAJ0577677.1 96644 g307410 i0 100 0.304812834224599 19 0 30.5 0 74 18 116 134 CAJ0577677.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 57 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
32509323 32509323 PRJNA316313_P_NODE_422459_length_151_cov_4.780702_g421073_i0 PRJNA316313 422459 151 4.780702 7.21886002 Heligmosomoides polygyrus 6339 Nematoda Nematoda 42 0.0192   NR VDO90088.1 6339 g421073 i0 48.4 0.615894039735099 31 16 61.6 0 145 53 9 39 VDO90088.1 unnamed protein product [Heligmosomoides polygyrus] diamond 93 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
32526732 32526732 PRJNA316313_S_NODE_1459_length_186_cov_1.275168_g1456_i0 PRJNA316313 1459 186 1.275168 2.37181248 Caenorhabditis 6237 Nematoda Nematoda 70.9 2.06e-12   NR ULT91226.1 6238 g1456 i0 63.5 1.67741935483871 52 19 83.9 0 23 178 482 533 ULT91226.1 hypothetical protein L3Y34_009079 [Caenorhabditis briggsae] diamond 312 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;