RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA316313", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA316313 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27611744 27611744 PRJNA316313_P_NODE_323224_length_187_cov_2.180000_g321838_i0 PRJNA316313 323224 187 2.18 4.0766 Minisyncoccota bacterium 2053589 Bacteria Bacteria 47.4 3.27e-4   NR MEX0597462.1 2053589 g321838 i0 80 0.401069518716578 25 5 40.1 0 76 2 123 147 MEX0597462.1 Wss1p-related putative metallopeptidase [Candidatus Paceibacterota bacterium] diamond 75 47.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27643383 27643383 PRJNA316313_P_NODE_266644_length_187_cov_2.600000_g265258_i0 PRJNA316313 266644 187 2.6 4.862 Minisyncoccota bacterium 2053589 Bacteria Bacteria 50.8 2.53e-5   NR MFA6274310.1 2053589 g265258 i0 95.8 0.385026737967914 24 1 38.5 0 76 5 142 165 MFA6274310.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 72 50.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29113055 29113055 PRJNA316313_P_NODE_426428_length_151_cov_4.552632_g425042_i0 PRJNA316313 426428 151 4.552632 6.87447432 Bacteria 2 Bacteria Bacteria 47.4 2.48e-4   NR MEZ0287311.1 2053589 g425042 i0 59.4 1.25165562913907 32 13 63.6 0 2 97 157 188 MEZ0287311.1 phosphopantothenoylcysteine decarboxylase [Candidatus Paceibacterota bacterium] diamond 189 47.8 0.99163179916318 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;