RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA315399" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315399 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27927304 27927304 PRJNA315399_S_NODE_107485_length_175_cov_3.340580_g107284_i0 PRJNA315399 107485 175 3.34058 5.846015 Synergistaceae bacterium 2053624 Bacteria Bacteria 65.9 4.74e-12   NR MBR0250797.1 2053624 g107284 i0 71.4 0.84 49 14 84 0 152 6 6 54 MBR0250797.1 hypothetical protein [Synergistaceae bacterium] diamond 147 65.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30864199 30864199 PRJNA315399_P_NODE_416434_length_160_cov_2.162602_g415986_i0 PRJNA315399 416434 160 2.162602 3.4601632 Synergistaceae bacterium 2053624 Bacteria Bacteria 69.3 4.89e-12   NR MCK9437304.1 2053624 g415986 i0 76.6 0.88125 47 11 88.1 0 15 155 747 793 MCK9437304.1 type I restriction-modification system subunit M [Synergistaceae bacterium] diamond 141 69.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32002644 32002644 PRJNA315399_P_NODE_173678_length_186_cov_14.395973_g173230_i0 PRJNA315399 173678 186 14.395973 26.77650978 Synergistaceae bacterium 2053624 Bacteria Bacteria 63.9 5.64e-10   NR NLH94819.1 2053624 g173230 i0 100 0.483870967741935 30 0 48.4 0 175 86 371 400 NLH94819.1 nodulation protein NfeD [Synergistaceae bacterium] diamond 90 63.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32350858 32350858 PRJNA315399_P_NODE_206739_length_184_cov_6.482993_g206291_i0 PRJNA315399 206739 184 6.482993 11.92870712 Synergistaceae bacterium 2053624 Bacteria Bacteria 45.4 0.00127   NR MBQ7560093.1 2053624 g206291 i0 84 1.22282608695652 25 4 40.8 0 171 97 1 25 MBQ7560093.1 DJ-1/PfpI family protein [Synergistaceae bacterium] diamond 225 45.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;