RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA315399" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2936140 2936140 PRJNA315399_S_NODE_65223_length_200_cov_2.380368_g65022_i0 PRJNA315399 65223 200 2.380368 4.760736 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 132 2.17e-26   NTclustered gi|2893358400|emb|OZ220691.1| 2026742 g65022 i0 82.877 2.56 146 25 73 0 16 161 1590904 1591049 MAG: Gemmatimonadota bacterium isolate 1766b9ea-3269-4cc1-97f5-695b05480569 genome assembly, chromosome: 1 blastn 512 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
9311624 9311624 PRJNA315399_P_NODE_489488_length_152_cov_3.713043_g489040_i0 PRJNA315399 489488 152 3.713043 5.64382536 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 90.5 1.43e-20   NR MES3034140.1 2026742 g489040 i0 95.7 0.927631578947368 47 2 92.8 0 8 148 118 164 MES3034140.1 ribonuclease PH [Gemmatimonadota bacterium] diamond 141 90.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
15685064 15685064 PRJNA315399_P_NODE_300593_length_179_cov_2.330986_g300145_i0 PRJNA315399 300593 179 2.330986 4.17246494 FCB group 1783270 Bacteria Bacteria 55.8 3.7e-7   NR ODS99941.1 1660163 g300145 i0 55.6 7.05586592178771 54 15 90.5 1 17 178 1 45 ODS99941.1 MAG: AAA family ATPase [Gemmatimonadetes bacterium SCN 70-22] diamond 1263 56.2 0.99288256227758 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium SCN 70-22
22058337 22058337 PRJNA315399_P_NODE_208918_length_184_cov_5.074830_g208470_i0 PRJNA315399 208918 184 5.07483 9.3376872 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 56.5 0.001   NTclustered gi|226088597|dbj|AP009153.1| 379066 g208470 i0 94.444 0.195652173913043 36 2 20 0 15 50 1020544 1020579 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 36 56.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
26884759 26884759 PRJNA315399_P_NODE_496781_length_151_cov_6.263158_g496333_i0 PRJNA315399 496781 151 6.263158 9.45736858 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.3 0.00259   NR MDQ3556486.1 2026742 g496333 i0 60.6 1.3112582781457 33 13 65.6 0 53 151 105 137 MDQ3556486.1 hypothetical protein [Gemmatimonadota bacterium] diamond 198 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27327413 27327413 PRJNA315399_S_NODE_74463_length_193_cov_2.205128_g74262_i0 PRJNA315399 74463 193 2.205128 4.25589704 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 100 6.53e-23   NR HEV8124797.1 2448054 g74262 i0 78.7 0.948186528497409 61 13 94.8 0 193 11 625 685 HEV8124797.1 serine/threonine-protein kinase [Gemmatimonadales bacterium] diamond 183 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27674923 27674923 PRJNA315399_S_NODE_120204_length_170_cov_3.639098_g120003_i0 PRJNA315399 120204 170 3.639098 6.1864666 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 63.2 5.09e-11   NR MEO8293967.1 2026742 g120003 i0 90.9 1.16470588235294 33 3 58.2 0 169 71 82 114 MEO8293967.1 FHA domain-containing protein [Gemmatimonadota bacterium] diamond 198 63.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28527340 28527340 PRJNA315399_P_NODE_254127_length_181_cov_6.375000_g253679_i0 PRJNA315399 254127 181 6.375 11.53875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42 0.0309   NR MEP7382486.1 2026742 g253679 i0 40.7 0.895027624309392 54 29 89.5 1 169 8 155 205 MEP7382486.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) [Gemmatimonadota bacterium] diamond 162 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28685205 28685205 PRJNA315399_P_NODE_342567_length_171_cov_7.320896_g342119_i0 PRJNA315399 342567 171 7.320896 12.51873216 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 40.4 0.0212   NR HIF39115.1 2026742 g342119 i0 37.8 0.789473684210526 45 25 78.9 1 148 14 18 59 HIF39115.1 hypothetical protein [Gemmatimonadota bacterium] diamond 135 40.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29127322 29127322 PRJNA315399_P_NODE_484929_length_152_cov_8.008696_g484481_i0 PRJNA315399 484929 152 8.008696 12.17321792 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 50.4 2.03e-5   NR MET0400132.1 3047548 g484481 i0 75 3.59210526315789 28 7 55.3 0 11 94 288 315 MET0400132.1 NAD(P)/FAD-dependent oxidoreductase [Longimicrobiaceae bacterium] diamond 546 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29253100 29253100 PRJNA315399_P_NODE_339129_length_172_cov_7.614815_g338681_i0 PRJNA315399 339129 172 7.614815 13.0974818 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 64.7 1.56e-11   NR HEX2251616.1 2448054 g338681 i0 56.3 2.56395348837209 48 21 83.7 0 15 158 72 119 HEX2251616.1 nuclear transport factor 2 family protein [Gemmatimonadales bacterium] diamond 441 64.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29397095 29397095 PRJNA315399_P_NODE_374149_length_165_cov_1.570312_g373701_i0 PRJNA315399 374149 165 1.570312 2.5910148 Bacteria 2 Bacteria Bacteria 72.8 3.35e-13   NR MEO7040685.1 2026741 g373701 i0 63.5 6.63636363636364 52 19 94.5 0 159 4 344 395 MEO7040685.1 DEAD/DEAH box helicase [Gemmatimonadaceae bacterium] diamond 1095 72.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29474061 29474061 PRJNA315399_P_NODE_341830_length_172_cov_1.007407_g341382_i0 PRJNA315399 341830 172 1.007407 1.73274004 Longimicrobiales bacterium 2910168 Bacteria Bacteria 55.5 3.91e-7   NR MEQ9401256.1 2910168 g341382 i0 50 1.74418604651163 50 25 87.2 0 162 13 177 226 MEQ9401256.1 N-acetylmuramoyl-L-alanine amidase [Longimicrobiales bacterium] diamond 300 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
29916659 29916659 PRJNA315399_S_NODE_197091_length_150_cov_3.690265_g196890_i0 PRJNA315399 197091 150 3.690265 5.5353975 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 54.3 8.83e-7   NR MEO5798929.1 2448054 g196890 i0 80 1.2 30 6 60 0 93 4 1 30 MEO5798929.1 Na+/H+ antiporter NhaC family protein [Gemmatimonadales bacterium] diamond 180 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30264322 30264322 PRJNA315399_P_NODE_95312_length_203_cov_6.524096_g94864_i0 PRJNA315399 95312 203 6.524096 13.24391488 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 58.9 4.29e-8   NR MES2179017.1 2026742 g94864 i0 80 0.517241379310345 35 7 51.7 0 192 88 402 436 MES2179017.1 right-handed parallel beta-helix repeat-containing protein [Gemmatimonadota bacterium] diamond 105 58.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30485217 30485217 PRJNA315399_P_NODE_456573_length_155_cov_6.440678_g456125_i0 PRJNA315399 456573 155 6.440678 9.9830509 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.8 1.54e-5   NR MBK6305945.1 2026742 g456125 i0 83.3 0.464516129032258 24 4 46.5 0 75 4 8 31 MBK6305945.1 glycosyltransferase [Gemmatimonadota bacterium] diamond 72 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30516796 30516796 PRJNA315399_S_NODE_50313_length_214_cov_5.451977_g50112_i0 PRJNA315399 50313 214 5.451977 11.66723078 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 92.8 3.03e-20   NR HET9013631.1 2026741 g50112 i0 70 0.981308411214953 70 21 98.1 0 213 4 55 124 HET9013631.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 210 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31450829 31450829 PRJNA315399_P_NODE_296356_length_179_cov_2.971831_g295908_i0 PRJNA315399 296356 179 2.971831 5.31957749 FCB group 1783270 Bacteria Bacteria 42 0.0292   NR HEY5415414.1 2026741 g295908 i0 72 0.837988826815642 25 7 41.9 0 78 4 89 113 HEY5415414.1 DMT family transporter [Gemmatimonadaceae bacterium] diamond 150 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31591569 31591569 PRJNA315399_P_NODE_188436_length_185_cov_10.337838_g187988_i0 PRJNA315399 188436 185 10.337838 19.1250003 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 81.3 4.56e-16   NR MDQ8144876.1 2026742 g187988 i0 70.7 1.88108108108108 58 17 94.1 0 5 178 23 80 MDQ8144876.1 AAA family ATPase [Gemmatimonadota bacterium] diamond 348 81.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31781066 31781066 PRJNA315399_S_NODE_165917_length_157_cov_1.758333_g165716_i0 PRJNA315399 165917 157 1.758333 2.76058281 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.3 0.0032   NR MEW5918466.1 2026742 g165716 i0 47.7 0.840764331210191 44 23 84.1 0 21 152 224 267 MEW5918466.1 Ig-like domain-containing protein [Gemmatimonadota bacterium] diamond 132 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31844288 31844288 PRJNA315399_P_NODE_235437_length_182_cov_14.013793_g234989_i0 PRJNA315399 235437 182 14.013793 25.50510326 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 66.2 6.11e-11   NR HEY9014536.1 2448054 g234989 i0 68.3 1.97802197802198 60 17 95.6 1 4 177 226 285 HEY9014536.1 type IV pilus assembly protein PilM [Gemmatimonadales bacterium] diamond 360 66.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31844321 31844321 PRJNA315399_P_NODE_446637_length_156_cov_8.184874_g446189_i0 PRJNA315399 446637 156 8.184874 12.76840344 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 47.8 1.85e-4   NR HEY6219856.1 2026741 g446189 i0 87.5 0.461538461538462 24 3 46.2 0 12 83 176 199 HEY6219856.1 diacylglycerol kinase family protein [Gemmatimonadaceae bacterium] diamond 72 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31844329 31844329 PRJNA315399_P_NODE_501257_length_151_cov_3.263158_g500809_i0 PRJNA315399 501257 151 3.263158 4.9273685800000004 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 83.2 3.3e-17   NR PYO74548.1 2026742 g500809 i0 78.3 6.37748344370861 46 10 91.4 0 146 9 120 165 PYO74548.1 MAG: hypothetical protein DMD67_13410 [Gemmatimonadota bacterium] diamond 963 83.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32065838 32065838 PRJNA315399_P_NODE_403898_length_161_cov_3.943548_g403450_i0 PRJNA315399 403898 161 3.943548 6.34911228 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.4 0.00757   NR MEX1258686.1 2026742 g403450 i0 40 0.93167701863354 50 30 93.2 0 9 158 16 65 MEX1258686.1 biopolymer transporter ExbD [Gemmatimonadota bacterium] diamond 150 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32083327 32083327 PRJNA315399_P_NODE_316978_length_178_cov_1.702128_g316530_i0 PRJNA315399 316978 178 1.702128 3.02978784 Gemmatimonas 173479 Bacteria Bacteria 50.1 2.44e-5   NR MEP6834479.1 1962908 g316530 i0 88 1.68539325842697 25 3 42.1 0 76 2 41 65 MEP6834479.1 inosine/xanthosine triphosphatase [Gemmatimonas sp.] diamond 300 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32350903 32350903 PRJNA315399_P_NODE_52739_length_234_cov_7.355330_g52291_i0 PRJNA315399 52739 234 7.35533 17.2114722 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.4 0.0442   NR HTE46340.1 2026741 g52291 i0 42.3 0.666666666666667 52 25 66.7 1 50 205 381 427 HTE46340.1 CapA family protein [Gemmatimonadaceae bacterium] diamond 156 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;