RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA315399", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 17 ✖

tax_clade 1

  • Sar · 17 ✖

bioproject 1

  • PRJNA315399 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2932733 2932733 PRJNA315399_P_NODE_249223_length_182_cov_2.427586_g248775_i0 PRJNA315399 249223 182 2.427586 4.41820652 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 141 3.21e-29   NTclustered gi|325194231|emb|FR825088.1| 890382 g248775 i0 100 1.01098901098901 76 0 81 0 107 182 1107 1182 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 184 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
2933735 2933735 PRJNA315399_P_NODE_414623_length_160_cov_3.235772_g414175_i0 PRJNA315399 414623 160 3.235772 5.1772352 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 222 9.559999999999999e-54   NTclustered gi|325194231|emb|FR825088.1| 890382 g414175 i0 93.377 1.29375 151 9 94 1 9 159 1082 1231 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 207 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5487786 5487786 PRJNA315399_S_NODE_105125_length_176_cov_3.359712_g104924_i0 PRJNA315399 105125 176 3.359712 5.91309312 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 309 7.98e-80   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g104924 i0 100 98.6818181818182 167 0 95 0 7 173 9650 9484 Pythium ultimum mitochondrion, complete genome blastn 17368 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
6762877 6762877 PRJNA315399_S_NODE_39866_length_228_cov_12.890052_g39665_i0 PRJNA315399 39866 228 12.890052 29.38931856 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 63.9 9.39e-6   NTclustered gi|2794915906|ref|XM_067893153.1| 164328 g39665 i0 93.023 0.18859649122807 43 3 19 0 174 216 570 528 Phytophthora ramorum 60S ribosomal protein L18-2 (KRP23_7794), partial mRNA blastn 43 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
9309523 9309523 PRJNA315399_P_NODE_154168_length_188_cov_6.450331_g153720_i0 PRJNA315399 154168 188 6.450331 12.12662228 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 110 9.43e-20   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g153720 i0 92.308 33.6755319148936 78 4 70 2 100 175 10196 10273 Pythium ultimum mitochondrion, complete genome blastn 6331 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
13820046 13820046 PRJNA315399_S_NODE_144391_length_162_cov_5.528000_g144190_i0 PRJNA315399 144391 162 5.528 8.95536 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 235 1.25e-57   NTclustered gi|1820797599|gb|MT192342.1| 4798 g144190 i0 95.862 89.5061728395062 145 6 90 0 1 145 260 116 Pythium hydnosporum isolate JZB3410001 large subunit ribosomal RNA gene, partial sequence blastn 14500 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
15687896 15687896 PRJNA315399_S_NODE_41173_length_226_cov_9.269841_g40972_i0 PRJNA315399 41173 226 9.269841 20.94984066 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 335 1.7799999999999993e-87   NTclustered gi|325195136|emb|FR825930.1| 890382 g40972 i0 100 15.4778761061947 181 0 80 0 12 192 1 181 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 3498 335 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
19511156 19511156 PRJNA315399_S_NODE_34456_length_238_cov_5.238806_g34255_i0 PRJNA315399 34456 238 5.238806 12.46835828 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 387 5.16e-103   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g34255 i0 96.957 100.911764705882 230 7 97 0 1 230 9172 9401 Pythium ultimum mitochondrion, complete genome blastn 24017 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
20785994 20785994 PRJNA315399_S_NODE_147877_length_161_cov_5.766129_g147676_i0 PRJNA315399 147877 161 5.766129 9.28346769 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 143 7.72e-30   NTclustered gi|325195057|emb|FR825852.1| 890382 g147676 i0 86.331 9.50310559006211 139 10 83 8 1 133 308 173 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 1530 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
22058919 22058919 PRJNA315399_P_NODE_303538_length_178_cov_7.680851_g303090_i0 PRJNA315399 303538 178 7.680851 13.67191478 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.015   NTclustered gi|325196118|emb|FR826908.1| 890382 g303090 i0 100 0.157303370786517 28 0 16 0 114 141 147 174 Albugo laibachii Nc14, genomic contig CONTIG_4075_NC14_v4_276_8 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
23334356 23334356 PRJNA315399_P_NODE_285299_length_179_cov_6.485915_g284851_i0 PRJNA315399 285299 179 6.485915 11.60978785 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 307 2.9300000000000005e-79   NTclustered gi|1378166683|ref|XM_024717537.1| 4781 g284851 i0 99.412 2.89385474860335 170 0 94 1 6 174 62 231 Plasmopara halstedii uncharacterized protein (PHALS_03264), partial mRNA blastn 518 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
28291855 28291855 PRJNA315399_S_NODE_160846_length_158_cov_2.760331_g160645_i0 PRJNA315399 160846 158 2.760331 4.36132298 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 97.4 6.38e-22   NR CAI5714890.1 134698 g160645 i0 94.2 9.87341772151899 52 3 98.7 0 3 158 371 422 CAI5714890.1 unnamed protein product [Peronospora farinosa] diamond 1560 97.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
29190377 29190377 PRJNA315399_S_NODE_76029_length_192_cov_1.825806_g75828_i0 PRJNA315399 76029 192 1.825806 3.50554752 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 93.2 2.77e-20   NR RQM17341.1 542832 g75828 i0 96.2 3.25 52 2 81.3 0 187 32 154 205 RQM17341.1 hypothetical protein DD237_001082 [Peronospora effusa] diamond 624 93.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa
29726714 29726714 PRJNA315399_P_NODE_491810_length_152_cov_2.834783_g491362_i0 PRJNA315399 491810 152 2.834783 4.30887016 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.00425   NR TMW63265.1 41045 g491362 i0 42.6 1.20394736842105 61 21 92.8 1 10 150 37 97 TMW63265.1 hypothetical protein Poli38472_002206 [Pythium oligandrum] diamond 183 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30548268 30548268 PRJNA315399_P_NODE_226933_length_183_cov_4.246575_g226485_i0 PRJNA315399 226933 183 4.246575 7.77123225 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 67 4.49e-11   NR KAG1690634.1 4784 g226485 i0 73.9 7.54098360655738 46 8 75.4 1 39 176 135 176 KAG1690634.1 hypothetical protein DVH05_027985 [Phytophthora capsici] diamond 1380 67 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
31008170 31008170 PRJNA315399_S_NODE_43114_length_224_cov_1.641711_g42913_i0 PRJNA315399 43114 224 1.641711 3.67743264 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 99 1.75e-22   NR XP_012198630.1 695850 g42913 i0 60.9 1.83482142857143 69 27 92.4 0 4 210 316 384 XP_012198630.1 hypothetical protein SPRG_19678 [Saprolegnia parasitica CBS 223.65] diamond 411 100 0.99 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
32414047 32414047 PRJNA315399_P_NODE_241419_length_182_cov_4.786207_g240971_i0 PRJNA315399 241419 182 4.786207 8.71089674 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 39.7 0.0388   NR GMF59784.1 1490495 g240971 i0 39.6 0.791208791208791 48 26 74.2 1 20 154 24 71 GMF59784.1 unnamed protein product [Phytophthora fragariaefolia] diamond 144 39.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;