RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA315399", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA315399 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
383262 383262 PRJNA315399_P_NODE_437481_length_157_cov_8.325000_g437033_i0 PRJNA315399 437481 157 8.325 13.07025 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g437033 i0 100 0.178343949044586 28 0 18 0 69 96 17907 17880 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 28 52.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
31165812 31165812 PRJNA315399_P_NODE_478055_length_153_cov_4.155172_g477607_i0 PRJNA315399 478055 153 4.155172 6.35741316 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 6.29e-7   NR YP_009350065.1 70186 g477607 i0 78.9 4.27450980392157 38 8 74.5 0 33 146 22 59 YP_009350065.1 NADH dehydrogenase subunit 1 [Spongospora subterranea] diamond 654 54.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;