RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA315399", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA315399 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26757761 26757761 PRJNA315399_P_NODE_362881_length_166_cov_12.465116_g362433_i0 PRJNA315399 362881 166 12.465116 20.69209256 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.4 0.0179   NR MBF0216978.1 2035772 g362433 i0 38.3 0.849397590361446 47 27 81.3 1 3 137 4633 4679 MBF0216978.1 AAA family ATPase [Candidatus Omnitrophota bacterium] diamond 141 42.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27674913 27674913 PRJNA315399_P_NODE_78744_length_212_cov_3.028571_g78296_i0 PRJNA315399 78744 212 3.028571 6.42057052 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47 7.9e-4   NR MDP3703112.1 2035772 g78296 i0 43.1 0.820754716981132 58 33 82.1 0 202 29 508 565 MDP3703112.1 ATPase, T2SS/T4P/T4SS family [Candidatus Omnitrophota bacterium] diamond 174 47 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28148380 28148380 PRJNA315399_P_NODE_206025_length_184_cov_7.095238_g205577_i0 PRJNA315399 206025 184 7.095238 13.05523792 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 70.5 2.58e-12   NR MDD5595476.1 2035772 g205577 i0 59.4 1.125 69 14 89.7 1 10 174 220 288 MDD5595476.1 pyruvate ferredoxin oxidoreductase [Candidatus Omnitrophota bacterium] diamond 207 70.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28671035 28671035 PRJNA315399_S_NODE_35207_length_237_cov_2.190000_g35006_i0 PRJNA315399 35207 237 2.19 5.1903 Bacteria 2 Bacteria Bacteria 136 1.56e-37   NR KPK99123.1 1703777 g35006 i0 79.5 19.6075949367089 78 16 98.7 0 235 2 45 122 KPK99123.1 MAG: 50S ribosomal protein L2 [Omnitrophica WOR_2 bacterium SM23_72] diamond 4647 136 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium SM23_72
30074240 30074240 PRJNA315399_P_NODE_327392_length_176_cov_2.496403_g326944_i0 PRJNA315399 327392 176 2.496403 4.39366928 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 44.3 0.00439   NR HNV86778.1 2035772 g326944 i0 83.3 0.409090909090909 24 4 40.9 0 74 3 406 429 HNV86778.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 72 44.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31179934 31179934 PRJNA315399_P_NODE_422675_length_159_cov_3.959016_g422227_i0 PRJNA315399 422675 159 3.959016 6.29483544 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 56.6 8.08e-8   NR MFH0985869.1 2035772 g422227 i0 54.5 0.830188679245283 44 20 83 0 150 19 73 116 MFH0985869.1 exosortase C-terminal domain/associated protein EpsI [Candidatus Omnitrophota bacterium] diamond 132 56.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32634863 32634863 PRJNA315399_P_NODE_438520_length_157_cov_6.416667_g438072_i0 PRJNA315399 438520 157 6.416667 10.07416719 Candidatus Omnitrophica bacterium CG12_big_fil_rev_8_21_14_ 2035772 Bacteria Bacteria 45.8 9.14e-4   NR PIW68364.1 1974751 g438072 i0 72.2 0.687898089171974 36 4 68.8 1 116 9 182 211 PIW68364.1 MAG: IS5/IS1182 family transposase [Candidatus Omnitrophica bacterium CG12_big_fil_rev_8_21_14_0_65_42_8] diamond 108 45.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG12_big_fil_rev_8_21_14_0_65_42_8

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;