RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA315399" and tax_clade = "OMG group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • OMG group · 1 ✖

bioproject 1

  • PRJNA315399 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27327304 27327304 PRJNA315399_P_NODE_150963_length_189_cov_2.171053_g150515_i0 PRJNA315399 150963 189 2.171053 4.10329017 OM182 bacterium BACL3 MAG-12 2510334 Bacteria Bacteria 42 0.0323   NR KRO73214.1 1655577 g150515 i0 70.8 0.380952380952381 24 7 38.1 0 85 14 167 190 KRO73214.1 MAG: hypothetical protein ABR69_03850 [OM182 bacterium BACL3 MAG-120507-bin80] diamond 72 42 1 Bacteria OMG group Pseudomonadati Pseudomonadota Gammaproteobacteria       OM182 bacterium BACL3 MAG-120507-bin80

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;