RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA315399", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA315399 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26694538 26694538 PRJNA315399_S_NODE_88181_length_184_cov_5.938776_g87980_i0 PRJNA315399 88181 184 5.938776 10.92734784 Fidelibacterota bacterium 2026760 Bacteria Bacteria 64.3 7.63e-12   NR MCJ7801995.1 2026760 g87980 i0 60 0.815217391304348 50 20 81.5 0 31 180 1 50 MCJ7801995.1 hypothetical protein [Fidelibacterota bacterium] diamond 150 64.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
28842767 28842767 PRJNA315399_S_NODE_140148_length_164_cov_1.094488_g139947_i0 PRJNA315399 140148 164 1.094488 1.79496032 Fidelibacterota bacterium 2026760 Bacteria Bacteria 41.6 0.0329   NR MEL1232847.1 2026760 g139947 i0 43.2 0.676829268292683 37 21 67.7 0 8 118 187 223 MEL1232847.1 hypothetical protein [Fidelibacterota bacterium] diamond 111 41.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31608893 31608893 PRJNA315399_P_NODE_63416_length_223_cov_7.827957_g62968_i0 PRJNA315399 63416 223 7.827957 17.45634411 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0223   NR MDD3095235.1 2026760 g62968 i0 50 1.00896860986547 38 19 51.1 0 18 131 69 106 MDD3095235.1 RecX family transcriptional regulator [Fidelibacterota bacterium] diamond 225 43.1 0.990719257540603 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32855393 32855393 PRJNA315399_P_NODE_136140_length_191_cov_2.350649_g135692_i0 PRJNA315399 136140 191 2.350649 4.48973959 Fidelibacterota bacterium 2026760 Bacteria Bacteria 42.7 0.00957   NR MBS29645.1 2026760 g135692 i0 62.5 1.16230366492147 24 9 37.7 0 2 73 73 96 MBS29645.1 hypothetical protein [Fidelibacterota bacterium] diamond 222 42.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;