contig_metadata
11 rows where bioproject = "PRJNA315399", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9311011 | 9311011 | PRJNA315399_P_NODE_38908_length_254_cov_3.668203_g38461_i0 | PRJNA315399 | 38908 | 254 | 3.668203 | 9.31723562 | Fibrobacterota bacterium | 2052160 | Bacteria | Bacteria | 52.8 | 0.023 | NTclustered | gi|1958056460|gb|CP064986.1| | 2052160 | g38461 | i0 | 100 | 0.110236220472441 | 28 | 0 | 11 | 0 | 26 | 53 | 4488437 | 4488410 | Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacterota bacterium | |||||
| 14412269 | 14412269 | PRJNA315399_P_NODE_451672_length_156_cov_3.201681_g451224_i0 | PRJNA315399 | 451672 | 156 | 3.2016810000000002 | 4.99462236 | uncultured Fibrobacteria bacterium | 1758207 | Bacteria | Bacteria | 198 | 1.56e-46 | NTclustered | gi|2874253984|emb|OY970309.1| | 1758207 | g451224 | i0 | 93.893 | 53.5769230769231 | 131 | 8 | 84 | 0 | 8 | 138 | 1594904 | 1594774 | MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 | blastn | 8358 | 198 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | uncultured Fibrobacteria bacterium | ||||
| 26789714 | 26789714 | PRJNA315399_P_NODE_445141_length_157_cov_1.275000_g444693_i0 | PRJNA315399 | 445141 | 157 | 1.275 | 2.00175 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 91.3 | 3.91e-20 | NR | NLL14664.1 | 35828 | g444693 | i0 | 74 | 1.91082802547771 | 50 | 13 | 95.5 | 0 | 154 | 5 | 205 | 254 | NLL14664.1 right-handed parallel beta-helix repeat-containing protein [Fibrobacter sp.] | diamond | 300 | 91.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 27137151 | 27137151 | PRJNA315399_P_NODE_170362_length_187_cov_3.053333_g169914_i0 | PRJNA315399 | 170362 | 187 | 3.053333 | 5.70973271 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 44.3 | 0.005 | NR | MDR1760251.1 | 35828 | g169914 | i0 | 57.1 | 1.71657754010695 | 35 | 15 | 56.1 | 0 | 78 | 182 | 564 | 598 | MDR1760251.1 DNA polymerase III subunit alpha [Fibrobacter sp.] | diamond | 321 | 44.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 28810969 | 28810969 | PRJNA315399_P_NODE_385348_length_163_cov_4.904762_g384900_i0 | PRJNA315399 | 385348 | 163 | 4.904762 | 7.99476206 | Fibrobacteria bacterium | 2725311 | Bacteria | Bacteria | 49.3 | 5.95e-5 | NR | MCD6025108.1 | 2725311 | g384900 | i0 | 100 | 0.404907975460123 | 22 | 0 | 40.5 | 0 | 149 | 84 | 737 | 758 | MCD6025108.1 two component regulator propeller family protein [Fibrobacteria bacterium] | diamond | 66 | 49.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacteria bacterium | ||||
| 29221991 | 29221991 | PRJNA315399_P_NODE_440449_length_157_cov_4.466667_g440001_i0 | PRJNA315399 | 440449 | 157 | 4.466667 | 7.01266719 | Candidatus Fibrimonadaceae bacterium | 2872174 | Bacteria | Bacteria | 54.3 | 9.66e-7 | NR | MDR2583992.1 | 2872174 | g440001 | i0 | 43.9 | 1.08917197452229 | 57 | 18 | 82.2 | 2 | 17 | 145 | 312 | 368 | MDR2583992.1 DUF262 domain-containing protein [Candidatus Fibrimonadaceae bacterium] | diamond | 171 | 54.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Candidatus Fibrimonadales | Candidatus Fibrimonadaceae | Candidatus Fibrimonadaceae bacterium | ||
| 29569040 | 29569040 | PRJNA315399_P_NODE_454170_length_156_cov_1.462185_g453722_i0 | PRJNA315399 | 454170 | 156 | 1.462185 | 2.2810086 | Fibrobacteria bacterium | 2725311 | Bacteria | Bacteria | 41.2 | 0.0401 | NR | MCD6025426.1 | 2725311 | g453722 | i0 | 58.1 | 0.596153846153846 | 31 | 13 | 59.6 | 0 | 142 | 50 | 969 | 999 | MCD6025426.1 hypothetical protein [Fibrobacteria bacterium] | diamond | 93 | 41.2 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacteria bacterium | ||||
| 29663489 | 29663489 | PRJNA315399_S_NODE_162110_length_158_cov_1.462810_g161909_i0 | PRJNA315399 | 162110 | 158 | 1.46281 | 2.3112398 | Fibrobacteria bacterium | 2725311 | Bacteria | Bacteria | 71.2 | 3.38e-14 | NR | MCD6025332.1 | 2725311 | g161909 | i0 | 78.6 | 0.79746835443038 | 42 | 9 | 79.7 | 0 | 127 | 2 | 1 | 42 | MCD6025332.1 domain containing protein [Fibrobacteria bacterium] | diamond | 126 | 71.2 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacteria bacterium | ||||
| 30660584 | 30660584 | PRJNA315399_S_NODE_198253_length_150_cov_2.477876_g198052_i0 | PRJNA315399 | 198253 | 150 | 2.477876 | 3.716814 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 58.9 | 1.98e-8 | NR | WP_173475118.1 | 833 | g198052 | i0 | 54.5 | 3.64 | 44 | 20 | 88 | 0 | 1 | 132 | 219 | 262 | WP_173475118.1 DUF3383 family protein [Fibrobacter succinogenes] | diamond | 546 | 58.9 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter succinogenes | |
| 30737811 | 30737811 | PRJNA315399_P_NODE_391614_length_162_cov_7.416000_g391166_i0 | PRJNA315399 | 391614 | 162 | 7.416 | 12.01392 | Fibrobacteria bacterium | 2725311 | Bacteria | Bacteria | 87.8 | 1.32e-18 | NR | MCD6023596.1 | 2725311 | g391166 | i0 | 89.6 | 1.77777777777778 | 48 | 5 | 88.9 | 0 | 14 | 157 | 235 | 282 | MCD6023596.1 efflux family protein [Fibrobacteria bacterium] | diamond | 288 | 87.8 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacteria bacterium | ||||
| 30881689 | 30881689 | PRJNA315399_P_NODE_401114_length_161_cov_6.403226_g400666_i0 | PRJNA315399 | 401114 | 161 | 6.403226 | 10.30919386 | Fibrobacter | 832 | Bacteria | Bacteria | 98.2 | 3.58e-22 | NR | WP_290958416.1 | 35828 | g400666 | i0 | 75.8 | 16.1552795031056 | 62 | 5 | 96.9 | 1 | 5 | 160 | 483 | 544 | WP_290958416.1 ribonuclease R family protein [Fibrobacter sp.] | diamond | 2601 | 98.2 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;