RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA315399", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27060270 27060270 PRJNA315399_P_NODE_440362_length_157_cov_4.533333_g439914_i0 PRJNA315399 440362 157 4.533333 7.11733281 Bacteria 2 Bacteria Bacteria 54.3 9.64e-7   NR HOH31053.1 2030809 g439914 i0 51 2.65605095541401 49 24 93.6 0 150 4 322 370 HOH31053.1 formylglycine-generating enzyme family protein [Candidatus Hydrogenedentota bacterium] diamond 417 54.3 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28765539 28765539 PRJNA315399_S_NODE_145687_length_162_cov_2.720000_g145486_i0 PRJNA315399 145687 162 2.72 4.4064 Pseudomonadati 3379134 Bacteria Bacteria 80.1 7.95e-16   NR HOC67879.1 2030809 g145486 i0 60.4 11.8148148148148 53 21 98.1 0 2 160 366 418 HOC67879.1 sulfatase [Candidatus Hydrogenedentota bacterium] diamond 1914 80.9 0.990111248454882 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29965567 29965567 PRJNA315399_P_NODE_395931_length_162_cov_3.296000_g395483_i0 PRJNA315399 395931 162 3.296 5.33952 FCB group 1783270 Bacteria Bacteria 49.3 6.17e-5   NR MCX5770837.1 2030809 g395483 i0 46.3 2.5 54 24 90.7 1 162 16 168 221 MCX5770837.1 lamin tail domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 405 49.3 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;