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contig_metadata

28 rows where bioproject = "PRJNA315399", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

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tax_phylum 3

analysis 2

tax_superkingdom 1

  • Eukaryota · 28 ✖

tax_clade 1

  • Amoebozoa · 28 ✖

bioproject 1

  • PRJNA315399 · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
382919 382919 PRJNA315399_P_NODE_381161_length_164_cov_1.818898_g380713_i0 PRJNA315399 381161 164 1.818898 2.98299272 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|1160571678|ref|XM_020575333.1| 670386 g380713 i0 100 0.182926829268293 30 0 18 0 99 128 946 975 Polysphondylium pallidum PN500 putative transcriptional regulator partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
384809 384809 PRJNA315399_S_NODE_185521_length_152_cov_7.834783_g185320_i0 PRJNA315399 185521 152 7.834783 11.90887016 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.012   NTclustered gi|470247974|ref|XM_004357451.1| 261658 g185320 i0 100 0.184210526315789 28 0 18 0 60 87 719 692 Cavenderia fasciculata DNA helicase (pif1), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
1067179 1067179 PRJNA315399_S_NODE_90241_length_183_cov_4.595890_g90040_i0 PRJNA315399 90241 183 4.59589 8.4104787 Acanthamoeba 5754 Discosea other_Eukaryota 320 3.87e-83   NTclustered gi|507411|gb|U07415.1|APU07415 5757 g90040 i0 100 96.2841530054645 173 0 95 0 11 183 761 933 Acanthamoeba polyphaga JAC/S2 ATCC 50372 18S rRNA gene blastn 17620 320 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
5488128 5488128 PRJNA315399_S_NODE_14445_length_310_cov_3.065934_g14244_i0 PRJNA315399 14445 310 3.065934 9.5043954 Sappinia pedata 472956 Discosea other_Eukaryota 366 9.11e-97   NTclustered gi|157673611|gb|EU004599.1| 472956 g14244 i0 96.429 37.6741935483871 224 5 72 3 78 299 459 237 Sappinia pedata strain UK05-34-3a-M internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 11679 366 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Sappinia Sappinia pedata
8719380 8719380 PRJNA315399_S_NODE_22847_length_269_cov_3.655172_g22646_i0 PRJNA315399 22847 269 3.655172 9.83241268 Dictyostelium 5782 Evosea other_Eukaryota 52.8 0.025   NTclustered gi|19110825|gb|AF465308.1| 44689 g22646 i0 100 0.20817843866171 28 0 10 0 157 184 1308 1335 Dictyostelium discoideum ABC transporter ABCA.6 (abca6) gene, complete cds blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
11862785 11862785 PRJNA315399_S_NODE_101850_length_177_cov_13.014286_g101649_i0 PRJNA315399 101850 177 13.014286 23.03528622 Heterostelium pallidum 13642 Evosea other_Eukaryota 126 8.69e-25   NTclustered gi|60117108|ref|NC_006862.1| 13642 g101649 i0 92.222 1.31638418079096 90 6 50 1 39 127 172 261 Polysphondylium pallidum mitochondrion, complete genome blastn 233 126 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
15686802 15686802 PRJNA315399_S_NODE_106113_length_176_cov_1.323741_g105912_i0 PRJNA315399 106113 176 1.323741 2.32978416 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 68.9 8.2e-12   NR PRP77394.1 1890364 g105912 i0 56.9 0.988636363636364 58 22 97.2 3 4 174 344 399 PRP77394.1 hypothetical protein PROFUN_14400 [Planoprotostelium fungivorum] diamond 174 68.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
17644558 17644558 PRJNA315399_S_NODE_44994_length_221_cov_3.500000_g44793_i0 PRJNA315399 44994 221 3.5 7.735 Sappinia 343528 Discosea other_Eukaryota 309 1.05e-79   NTclustered gi|157673614|gb|EU004594.1| 472956 g44793 i0 92.237 78.7556561085973 219 16 99 1 2 220 1188 1405 Sappinia pedata strain NZ05-11L-1 small subunit ribosomal RNA gene, partial sequence blastn 17405 309 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Sappinia Sappinia pedata
19510500 19510500 PRJNA315399_S_NODE_14316_length_311_cov_3.313869_g14115_i0 PRJNA315399 14316 311 3.313869 10.30613259 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.029   NTclustered gi|12007269|gb|AF309947.1|AF309947 44689 g14115 i0 100 0.090032154340836 28 0 9 0 35 62 353 326 Dictyostelium discoideum Rac1A (rac1A) gene, complete cds; and unknown gene blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20786337 20786337 PRJNA315399_S_NODE_195357_length_150_cov_8.672566_g195156_i0 PRJNA315399 195357 150 8.672566 13.008849 Vannella sp. SEDFS 1215667 Discosea other_Eukaryota 204 3.19e-48   NTclustered gi|399764252|gb|JQ271763.1| 1215667 g195156 i0 92.857 94.54 140 10 93 0 11 150 258 397 Vannella sp. SEDFS 18S ribosomal RNA gene, partial sequence blastn 14181 204 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. SEDFS
22062102 22062102 PRJNA315399_S_NODE_75038_length_192_cov_6.812903_g74837_i0 PRJNA315399 75038 192 6.812903 13.08077376 Platyamoeba contorta 354200 Discosea other_Eukaryota 76.8 9.81e-10   NTclustered gi|78523079|gb|DQ229954.1| 354200 g74837 i0 95.745 24.5208333333333 47 2 24 0 137 183 651 605 Platyamoeba contorta isolate W51C#5 small subunit ribosomal RNA gene, partial sequence blastn 4708 76.8 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba contorta
25293244 25293244 PRJNA315399_S_NODE_68160_length_197_cov_10.087500_g67959_i0 PRJNA315399 68160 197 10.0875 19.872375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 337 4.21e-88   NTclustered gi|909719645|gb|KT185625.1| 5778 g67959 i0 98.936 49.994923857868 188 2 95 0 10 197 3681 3868 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 9849 337 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27359111 27359111 PRJNA315399_S_NODE_194863_length_151_cov_0.947368_g194662_i0 PRJNA315399 194863 151 0.947368 1.43052568 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 68.9 3.99e-13   NR XP_004339529.1 1257118 g194662 i0 92.9 0.556291390728477 28 2 55.6 0 16 99 114 141 XP_004339529.1 Ctype lysozyme/alpha-lactalbumin superfamily protein [Acanthamoeba castellanii str. Neff] diamond 84 68.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27611651 27611651 PRJNA315399_S_NODE_100864_length_178_cov_3.085106_g100663_i0 PRJNA315399 100864 178 3.085106 5.49148868 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.4 5.88e-8   NR PRP77231.1 1890364 g100663 i0 79.4 0.573033707865168 34 7 57.3 0 1 102 190 223 PRP77231.1 hypothetical protein PROFUN_15125 [Planoprotostelium fungivorum] diamond 102 57.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27755483 27755483 PRJNA315399_P_NODE_166224_length_187_cov_5.100000_g165776_i0 PRJNA315399 166224 187 5.1 9.537 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42 0.0345   NR KYQ96656.1 361077 g165776 i0 71.4 1.26737967914438 28 8 44.9 0 100 183 930 957 KYQ96656.1 protein serine/threonine kinase [Tieghemostelium lacteum] diamond 237 42.4 0.990566037735849 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
27801101 27801101 PRJNA315399_S_NODE_114504_length_172_cov_4.451852_g114303_i0 PRJNA315399 114504 172 4.451852 7.65718544 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 108 2.06e-28   NR PRP87692.1 1890364 g114303 i0 90.6 0.924418604651163 53 5 92.4 0 163 5 75 127 PRP87692.1 hypothetical protein PROFUN_02392 [Planoprotostelium fungivorum] diamond 159 108 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28765545 28765545 PRJNA315399_S_NODE_95427_length_181_cov_1.055556_g95226_i0 PRJNA315399 95427 181 1.055556 1.91055636 Eumycetozoa 142796 Evosea other_Eukaryota 56.2 2.1e-7   NR XP_003294366.1 5786 g95226 i0 45.8 2.32044198895028 48 26 79.6 0 181 38 174 221 XP_003294366.1 uncharacterized protein DICPUDRAFT_43294 [Dictyostelium purpureum] diamond 420 56.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30786971 30786971 PRJNA315399_P_NODE_460874_length_155_cov_3.127119_g460426_i0 PRJNA315399 460874 155 3.127119 4.84703445 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.1 0.00823   NR XP_003290252.1 5786 g460426 i0 66.7 4.70322580645161 27 9 52.3 0 11 91 405 431 XP_003290252.1 uncharacterized protein DICPUDRAFT_37084 [Dictyostelium purpureum] diamond 729 43.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30959125 30959125 PRJNA315399_P_NODE_148194_length_189_cov_3.782895_g147746_i0 PRJNA315399 148194 189 3.782895 7.14967155 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 53.1 3.96e-6   NR PRP86621.1 1890364 g147746 i0 50.9 4.3015873015873 55 8 57.1 1 180 73 126 180 PRP86621.1 hypothetical protein PROFUN_05100 [Planoprotostelium fungivorum] diamond 813 53.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31116860 31116860 PRJNA315399_S_NODE_174535_length_155_cov_1.932203_g174334_i0 PRJNA315399 174535 155 1.932203 2.99491465 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 92.4 1.07e-21   NR PRP83496.1 1890364 g174334 i0 86.3 0.987096774193548 51 7 98.7 0 153 1 131 181 PRP83496.1 60S ribosomal protein L27a-like [Planoprotostelium fungivorum] diamond 153 92.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31275023 31275023 PRJNA315399_P_NODE_106855_length_198_cov_14.285714_g106407_i0 PRJNA315399 106855 198 14.285714 28.28571372 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 53.9 2.43e-6   NR PRP74427.1 1890364 g106407 i0 53.7 0.621212121212121 41 19 62.1 0 55 177 704 744 PRP74427.1 hypothetical protein PROFUN_06556 [Planoprotostelium fungivorum] diamond 123 53.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31275097 31275097 PRJNA315399_S_NODE_115735_length_172_cov_1.844444_g115534_i0 PRJNA315399 115735 172 1.844444 3.17244368 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 40.8 0.0101   NR PRP89584.1 1890364 g115534 i0 67.9 0.488372093023256 28 9 48.8 0 4 87 29 56 PRP89584.1 hypothetical protein PROFUN_00848 [Planoprotostelium fungivorum] diamond 84 40.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31450831 31450831 PRJNA315399_P_NODE_308896_length_178_cov_3.836879_g308448_i0 PRJNA315399 308896 178 3.836879 6.82964462 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.5 0.00845   NR XP_003290364.1 5786 g308448 i0 82.6 5.91573033707865 23 4 38.8 0 103 171 120 142 XP_003290364.1 uncharacterized protein DICPUDRAFT_154861 [Dictyostelium purpureum] diamond 1053 43.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31559987 31559987 PRJNA315399_S_NODE_143456_length_163_cov_1.222222_g143255_i0 PRJNA315399 143456 163 1.222222 1.99222186 Dictyostelium purpureum 5786 Evosea other_Eukaryota 54.3 1.01e-6   NR XP_003289024.1 5786 g143255 i0 56.3 0.883435582822086 48 20 86.5 1 152 12 641 688 XP_003289024.1 uncharacterized protein DICPUDRAFT_94802 [Dictyostelium purpureum] diamond 144 54.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31749418 31749418 PRJNA315399_P_NODE_347577_length_170_cov_3.473684_g347129_i0 PRJNA315399 347577 170 3.473684 5.9052628 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.93e-5   NR XP_004339777.1 1257118 g347129 i0 72.7 0.582352941176471 33 9 58.2 0 100 2 140 172 XP_004339777.1 peroxisomal D3,D2enoyl-CoA isomerase isoform 1 variant, putative [Acanthamoeba castellanii str. Neff] diamond 99 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31749467 31749467 PRJNA315399_S_NODE_146157_length_162_cov_2.152000_g145956_i0 PRJNA315399 146157 162 2.152 3.48624 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 59.7 3.77e-9   NR PRP84519.1 1890364 g145956 i0 73.5 0.62962962962963 34 9 63 0 161 60 148 181 PRP84519.1 ribosomal protein L11 [Planoprotostelium fungivorum] diamond 102 59.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31875972 31875972 PRJNA315399_S_NODE_150337_length_161_cov_1.548387_g150136_i0 PRJNA315399 150337 161 1.548387 2.49290307 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 67 3.32e-11   NR KYQ92640.1 361077 g150136 i0 68.1 0.875776397515528 47 15 87.6 0 141 1 2 48 KYQ92640.1 C2 domain-containing protein [Tieghemostelium lacteum] diamond 141 67 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32287822 32287822 PRJNA315399_S_NODE_91459_length_183_cov_1.034247_g91258_i0 PRJNA315399 91459 183 1.034247 1.89267201 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 55.8 3.92e-7   NR PRP88348.1 1890364 g91258 i0 86.2 0.475409836065574 29 4 47.5 0 42 128 15 43 PRP88348.1 hypothetical protein PROFUN_03262 [Planoprotostelium fungivorum] diamond 87 55.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;