RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA315314" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
380720 380720 PRJNA315314_S_NODE_14921_length_211_cov_71.049451_g14600_i0 PRJNA315314 14921 211 71.049451 149.91434161 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 95.3 3.04e-15   NTclustered gi|1987595862|gb|MW617213.1| 167967 g14600 i0 88.095 123.796208530806 84 5 40 3 1 84 235 313 Uncultured Mycoplasma sp. clone cap-4 23S ribosomal RNA gene, partial sequence blastn 26121 95.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
6758341 6758341 PRJNA315314_S_NODE_1306_length_668_cov_10.059468_g1071_i0 PRJNA315314 1306 668 10.059468 67.19724624 Candidatus Mycoplasma mahonii 3004105 Bacteria Bacteria 60.2 3.98e-4   NTclustered gi|2554183568|gb|CP114583.1| 3004105 g1071 i0 100 0.182634730538922 32 0 5 0 69 100 637636 637605 Candidatus Mycoplasma mahonii isolate OP267 chromosome, complete genome blastn 122 60.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma mahonii
8034217 8034217 PRJNA315314_S_NODE_31447_length_152_cov_2.089431_g31126_i0 PRJNA315314 31447 152 2.089431 3.17593512 Haploplasma axanthum 29552 Bacteria Bacteria 73.1 9.54e-9   NTclustered gi|1563809587|emb|LR215048.1| 29552 g31126 i0 97.619 65.25 42 1 28 0 111 152 637943 637984 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 9918 73.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;