RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA315314", tax_phylum = "Ignavibacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Ignavibacteriota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3615830 3615830 PRJNA315314_S_NODE_11643_length_238_cov_2.799043_g11322_i0 PRJNA315314 11643 238 2.799043 6.66172234 Pseudomonadati 3379134 Bacteria Bacteria 237 5.499999999999999e-58   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g11322 i0 89.062 87.1890756302521 192 20 80 1 39 229 1603309 1603118 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 20751 237 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
8717894 8717894 PRJNA315314_S_NODE_21847_length_177_cov_53.810811_g21526_i0 PRJNA315314 21847 177 53.810811 95.24513547 Pseudomonadati 3379134 Bacteria Bacteria 246 6.389999999999999e-61   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g21526 i0 92.486 225.124293785311 173 12 98 1 2 174 1602697 1602526 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 39847 246 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
8717897 8717897 PRJNA315314_S_NODE_22127_length_176_cov_66.993197_g21806_i0 PRJNA315314 22127 176 66.993197 117.90802672 Pseudomonadati 3379134 Bacteria Bacteria 152 1.42e-32   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g21806 i0 84.416 791.909090909091 154 24 88 0 3 156 1603135 1602982 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 139376 152 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
13818763 13818763 PRJNA315314_S_NODE_3891_length_404_cov_227.669333_g3570_i0 PRJNA315314 3891 404 227.669333 919.78410532 Pseudomonadati 3379134 Bacteria Bacteria 425 1.98e-114   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g3570 i0 92.053 451.695544554455 302 24 75 0 1 302 1604269 1604570 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 182485 425 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
24607128 24607128 PRJNA315314_S_NODE_5740_length_336_cov_9.915309_g5419_i0 PRJNA315314 5740 336 9.915309 33.31543824 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 217 1.06e-51   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g5419 i0 81.071 4.07142857142857 280 46 82 7 1 276 429780 430056 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 1368 217 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
30959107 30959107 PRJNA315314_S_NODE_2634_length_489_cov_3.800000_g2325_i0 PRJNA315314 2634 489 3.8 18.582 Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_5 2049428 Bacteria Bacteria 47 0.0145   NR PIQ09371.1 1974047 g2325 i0 42.9 0.300613496932515 49 26 30.1 2 489 343 669 715 PIQ09371.1 MAG: hypothetical protein COW71_06735 [Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20] diamond 147 47 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20
32273429 32273429 PRJNA315314_S_NODE_15858_length_206_cov_1.813559_g15537_i0 PRJNA315314 15858 206 1.813559 3.73593154 Pseudomonadati 3379134 Bacteria Bacteria 57.8 1.15e-7   NR PIQ09371.1 1974047 g15537 i0 43.7 3.21844660194175 71 35 96.1 2 5 202 685 755 PIQ09371.1 MAG: hypothetical protein COW71_06735 [Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20] diamond 663 57.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;