RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA315314" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26694418 26694418 PRJNA315314_S_NODE_32081_length_151_cov_1.426230_g31760_i0 PRJNA315314 32081 151 1.42623 2.1536073 Giardia lamblia P15 658858 Fornicata other_Eukaryota 50.4 1.86e-5   NR EFO62754.1 658858 g31760 i0 42.9 0.973509933774834 49 28 97.4 0 3 149 72 120 EFO62754.1 Cathepsin B precursor [Giardia lamblia P15] diamond 147 50.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
26775533 26775533 PRJNA315314_S_NODE_21781_length_178_cov_1.825503_g21460_i0 PRJNA315314 21781 178 1.825503 3.24939534 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 2.06e-4   NR TNJ28365.1 5742 g21460 i0 42.4 5.88202247191011 59 34 99.4 0 177 1 57 115 TNJ28365.1 Ribosomal protein L10a [Giardia muris] diamond 1047 47.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
30548227 30548227 PRJNA315314_S_NODE_20473_length_183_cov_1.766234_g20152_i0 PRJNA315314 20473 183 1.766234 3.23220822 Hexamita inflata 28002 Fornicata other_Eukaryota 84.3 7.1e-19   NR CAK8803552.1 28002 g20152 i0 66.1 1.83606557377049 56 19 91.8 0 174 7 47 102 CAK8803552.1 HINF_063619 [Hexamita inflata] diamond 336 84.3 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;