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contig_metadata

32 rows where bioproject = "PRJNA315314" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315314 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4893089 4893089 PRJNA315314_S_NODE_14784_length_212_cov_53.710383_g14463_i0 PRJNA315314 14784 212 53.710383 113.86601196 Bacteria 2 Bacteria Bacteria 248 2.2099999999999997e-61   NTclustered gi|1015624362|gb|AH012920.2| 171953 g14463 i0 88.35 142.5 206 24 97 0 7 212 29533 29328 Uncultured Acidobacteria bacterium clone 46h5 hypothetical protein, putative O-linked GlcNAc transferase, putative two-component response regulator, hypothetical protein, putative penicillin-resistance DD-carboxypeptidase, putative glycosyl transferase, hypothetical protein, conserved hypothetical protein, hypothetical protein, putative MaoC family dehydratase, putative D-3-phosphoglycerate dehydrogenase, putative magnesium and cobalt transport protein, putative phosphatidyl-glycerophosphatase, putative 2-methylthioadenine synthetase, hypothetical protein, putative glutamine cyclotransferase, and hypothetical protein genes, complete cds; 5S ribosomal RNA, 23S ribosomal RNA, tRNA-Ala, tRNA-Met, tRNA-Ile, and 16S ribosomal RNA genes, complete sequence; and hypothetical protein genes, complete cds blastn 30210 248 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
5484169 5484169 PRJNA315314_S_NODE_14085_length_217_cov_11.569149_g13764_i0 PRJNA315314 14085 217 11.569149 25.10505333 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 257 3.78e-64   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g13764 i0 88.318 224.857142857143 214 25 99 0 1 214 3559284 3559071 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 48794 257 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
5484241 5484241 PRJNA315314_S_NODE_1825_length_574_cov_1582.480734_g1555_i0 PRJNA315314 1825 574 1582.480734 9083.43941316 Geothrix sp. 21YS21S-4 3068889 Bacteria Bacteria 512 2.1599999999999997e-140   NTclustered gi|2565867660|gb|CP132719.1| 3068889 g1555 i0 91.029 126.923344947735 379 34 66 0 196 574 150537 150915 Geothrix sp. 21YS21S-4 chromosome, complete genome blastn 72854 512 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-4
6168039 6168039 PRJNA315314_S_NODE_10705_length_247_cov_138.633028_g10384_i0 PRJNA315314 10705 247 138.633028 342.42357916 Geothrix 44675 Bacteria Bacteria 326 1.19e-84   NTclustered gi|84452201|emb|AM180899.1| 171953 g10384 i0 90.688 591.882591093117 247 20 99 3 1 245 1717 1472 Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC11_kan2 blastn 146195 326 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7443152 7443152 PRJNA315314_S_NODE_14646_length_213_cov_57.543478_g14325_i0 PRJNA315314 14646 213 57.543478 122.56760814 Bacteria 2 Bacteria Bacteria 337 4.62e-88   NTclustered gi|2874253692|emb|OY969418.1| 171953 g14325 i0 96.117 128.215962441315 206 8 97 0 8 213 4231896 4231691 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 27310 339 0.994100294985251 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7443217 7443217 PRJNA315314_S_NODE_25286_length_166_cov_183.029197_g24965_i0 PRJNA315314 25286 166 183.029197 303.82846702 Bacteria 2 Bacteria Bacteria 291 2.7099999999999998e-74   NTclustered gi|2874254027|emb|OY970352.1| 171953 g24965 i0 98.193 249.849397590361 166 3 100 0 1 166 2366070 2366235 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 41475 291 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8034291 8034291 PRJNA315314_S_NODE_5967_length_330_cov_7.239203_g5646_i0 PRJNA315314 5967 330 7.239203 23.8893699 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 324 5.9599999999999995e-84   NTclustered gi|2874253692|emb|OY969418.1| 171953 g5646 i0 85.625 137.2 320 33 95 13 1 312 4233633 4233947 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 45276 324 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
9309059 9309059 PRJNA315314_S_NODE_6148_length_325_cov_296.341216_g5827_i0 PRJNA315314 6148 325 296.341216 963.108952 Geothrix sp. 21YS21S-4 3068889 Bacteria Bacteria 556 5.31e-154   NTclustered gi|2565867660|gb|CP132719.1| 3068889 g5827 i0 97.538 244.310769230769 325 8 100 0 1 325 151826 151502 Geothrix sp. 21YS21S-4 chromosome, complete genome blastn 79401 556 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-4
11859459 11859459 PRJNA315314_S_NODE_19810_length_185_cov_669.224359_g19489_i0 PRJNA315314 19810 185 669.224359 1238.06506415 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 172 1.16e-38   NTclustered gi|112980853|gb|DQ829657.1| 171953 g19489 i0 83.511 179.475675675676 188 27 100 4 1 185 382 196 Uncultured Acidobacteria bacterium clone DON33 23S ribosomal RNA gene, partial sequence blastn 33203 172 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
11859708 11859708 PRJNA315314_S_NODE_6070_length_327_cov_353.506711_g5749_i0 PRJNA315314 6070 327 353.506711 1155.96694497 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 370 7.47e-98   NTclustered gi|217038917|gb|EU811008.1| 171953 g5749 i0 87.195 187.100917431193 328 39 100 3 1 327 382 57 Uncultured Acidobacteria bacterium clone 01QCW 23S ribosomal RNA gene, partial sequence blastn 61182 370 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14409755 14409755 PRJNA315314_S_NODE_2432_length_507_cov_14.585774_g2129_i0 PRJNA315314 2432 507 14.585774 73.94987418 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 488 3.1899999999999996e-133   NTclustered gi|2874254027|emb|OY970352.1| 171953 g2129 i0 84.54 243.364891518738 511 59 99 16 3 507 2366660 2367156 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 123386 488 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15092962 15092962 PRJNA315314_S_NODE_14092_length_217_cov_8.239362_g13771_i0 PRJNA315314 14092 217 8.239362 17.87941554 Holophagaceae 574976 Bacteria Bacteria 346 7.85e-91   NTclustered gi|84452196|emb|AM180894.1| 44676 g13771 i0 95.392 236.087557603687 217 10 100 0 1 217 1167 951 Geothrix fermentans partial 23S rRNA gene, strain DSM 14018 blastn 51231 346 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix fermentans
16367893 16367893 PRJNA315314_S_NODE_2953_length_460_cov_9.185615_g2636_i0 PRJNA315314 2953 460 9.185615 42.253829 Holophaga 35838 Bacteria Bacteria 427 6.349999999999998e-115   NTclustered gi|84452201|emb|AM180899.1| 171953 g2636 i0 83.582 282.930434782609 469 64 99 9 1 458 1260 1726 Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC11_kan2 blastn 130148 427 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16958522 16958522 PRJNA315314_S_NODE_9954_length_256_cov_81.414097_g9633_i0 PRJNA315314 9954 256 81.414097 208.42008832 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 246 9.95e-61   NTclustered gi|2874253677|emb|OY969111.1| 171953 g9633 i0 85.656 168.4921875 244 23 93 11 19 256 716223 715986 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 43134 246 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20782264 20782264 PRJNA315314_S_NODE_17777_length_195_cov_4.156627_g17456_i0 PRJNA315314 17777 195 4.156627 8.10542265 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 167 5.7699999999999995e-37   NTclustered gi|31789464|gb|AY281356.1| 171953 g17456 i0 95.238 268.805128205128 105 5 54 0 91 195 10686 10790 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 52417 167 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20782568 20782568 PRJNA315314_S_NODE_6377_length_319_cov_18.141379_g6056_i0 PRJNA315314 6377 319 18.141379 57.87099901 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 455 1.95e-123   NTclustered gi|192805573|emb|FM176375.1| 194844 g6056 i0 92.476 98.5862068965517 319 22 99 2 1 318 318 1 Uncultured Acidobacteriaceae bacterium partial 16S rRNA gene, clone CL5.H127 blastn 31449 455 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
22742062 22742062 PRJNA315314_S_NODE_13418_length_222_cov_20.989637_g13097_i0 PRJNA315314 13418 222 20.989637 46.59699414 Bacteria 2 Bacteria Bacteria 220 5.099999999999999e-53   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g13097 i0 85.068 81.2792792792793 221 27 99 6 1 219 3298696 3298912 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 18044 222 0.990990990990991 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
22742208 22742208 PRJNA315314_S_NODE_6418_length_318_cov_29.965398_g6097_i0 PRJNA315314 6418 318 29.965398 95.28996564 Bacteria 2 Bacteria Bacteria 394 4.3e-105   NTclustered gi|2874254027|emb|OY970352.1| 171953 g6097 i0 89.241 616.474842767296 316 33 99 1 4 318 2367342 2367657 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 196039 394 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
23332823 23332823 PRJNA315314_S_NODE_21039_length_180_cov_27.947020_g20718_i0 PRJNA315314 21039 180 27.94702 50.304636 Acidobacteriota bacterium 1978231 Bacteria Bacteria 215 1.84e-51   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g20718 i0 89.655 62.75 174 10 93 6 1 168 4649790 4649961 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 11295 215 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
24017120 24017120 PRJNA315314_S_NODE_17359_length_197_cov_6.660714_g17038_i0 PRJNA315314 17359 197 6.660714 13.12160658 Bacteria 2 Bacteria Bacteria 211 2.66e-50   NTclustered gi|2874254061|emb|OY970385.1| 2026791 g17038 i0 91.026 67.6446700507614 156 14 79 0 2 157 2774634 2774479 MAG: Bryobacterales bacterium isolate MFD03726.bin.c.1 genome assembly, chromosome: 1 blastn 13326 213 0.990610328638498 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
27295603 27295603 PRJNA315314_S_NODE_29503_length_156_cov_1.944882_g29182_i0 PRJNA315314 29503 156 1.944882 3.03401592 Bryobacterales bacterium 2026791 Bacteria Bacteria 41.6 0.02   NR MBL8235757.1 2026791 g29182 i0 52.2 0.884615384615385 46 22 88.5 0 16 153 91 136 MBL8235757.1 hypothetical protein [Bryobacterales bacterium] diamond 138 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
27674806 27674806 PRJNA315314_S_NODE_2484_length_502_cov_20.883721_g824_i2 PRJNA315314 2484 502 20.883721 104.83627942 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 66.2 3.68e-9   NR HSS49596.1 2651171 g824 i2 50 0.394422310756972 66 30 37.6 2 499 311 292 357 HSS49596.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 198 66.2 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28400791 28400791 PRJNA315314_S_NODE_23746_length_171_cov_4.352113_g23425_i0 PRJNA315314 23746 171 4.352113 7.44211323 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 41.6 0.0209   NR HEX9670850.1 2651171 g23425 i0 54.1 0.649122807017544 37 16 64.9 1 59 169 1 36 HEX9670850.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 111 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28685149 28685149 PRJNA315314_S_NODE_307_length_1327_cov_9.184129_g217_i0 PRJNA315314 307 1327 9.184129 121.87339183 Candidatus Angelobacter sp. 2976921 Bacteria Bacteria 72 1.29e-9   NR HET8888826.1 2976921 g217 i0 36.3 0.354935945742276 157 95 35 4 819 1283 218 371 HET8888826.1 ETX/MTX2 family pore-forming toxin [Candidatus Angelobacter sp.] diamond 471 72 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp.
30028797 30028797 PRJNA315314_S_NODE_16491_length_202_cov_2.901734_g16170_i0 PRJNA315314 16491 202 2.901734 5.86150268 Pseudomonadati 3379134 Bacteria Bacteria 75.1 8.28e-14   NR MBN2321290.1 1978231 g16170 i0 57.8 6.60891089108911 64 27 95 0 195 4 95 158 MBN2321290.1 signal peptide peptidase SppA [Acidobacteriota bacterium] diamond 1335 75.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30345149 30345149 PRJNA315314_S_NODE_15692_length_207_cov_1.820225_g15371_i0 PRJNA315314 15692 207 1.820225 3.76786575 Pseudomonadati 3379134 Bacteria Bacteria 46.6 0.00102   NR HEV2136394.1 1964191 g15371 i0 46.3 1.53623188405797 54 29 78.3 0 3 164 1521 1574 HEV2136394.1 choice-of-anchor D domain-containing protein [Terracidiphilus sp.] diamond 318 46.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
30642900 30642900 PRJNA315314_S_NODE_14593_length_214_cov_2.275676_g14272_i0 PRJNA315314 14593 214 2.275676 4.86994664 Terracidiphilus sp. 1964191 Bacteria Bacteria 42.7 0.0246   NR HMG85787.1 1964191 g14272 i0 34.4 1.79439252336449 64 40 86.9 1 209 24 284 347 HMG85787.1 cytochrome c3 family protein [Terracidiphilus sp.] diamond 384 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
31274998 31274998 PRJNA315314_S_NODE_24495_length_169_cov_2.078571_g24174_i0 PRJNA315314 24495 169 2.078571 3.51278499 Acidobacteriota bacterium 1978231 Bacteria Bacteria 78.6 8.81e-16   NR MBI3661592.1 1978231 g24174 i0 68.5 3.88757396449704 54 17 95.9 0 1 162 208 261 MBI3661592.1 SDR family NAD(P)-dependent oxidoreductase [Acidobacteriota bacterium] diamond 657 78.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31717872 31717872 PRJNA315314_S_NODE_18997_length_189_cov_4.362500_g18676_i0 PRJNA315314 18997 189 4.3625 8.245125 Candidatus Solibacter usitatus 332163 Bacteria Bacteria 84 2.42e-17   NR MBI5282310.1 332163 g18676 i0 62.3 0.968253968253968 61 23 96.8 0 7 189 231 291 MBI5282310.1 UDP-glucose 4-epimerase GalE [Candidatus Solibacter usitatus] diamond 183 84 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
31812730 31812730 PRJNA315314_S_NODE_18837_length_190_cov_2.645963_g18516_i0 PRJNA315314 18837 190 2.645963 5.0273297 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 119 4e-31   NR HTM50384.1 2212468 g18516 i0 84.1 0.994736842105263 63 10 99.5 0 1 189 147 209 HTM50384.1 hypothetical protein [Bryobacteraceae bacterium] diamond 189 119 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32666465 32666465 PRJNA315314_S_NODE_12760_length_228_cov_2.180905_g12439_i0 PRJNA315314 12760 228 2.180905 4.9724634 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 55.5 9.78e-7   NR HEY4380311.1 2052142 g12439 i0 42.6 1.73684210526316 68 38 89.5 1 226 23 92 158 HEY4380311.1 choice-of-anchor D domain-containing protein [Acidobacteriaceae bacterium] diamond 396 55.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
32760979 32760979 PRJNA315314_S_NODE_2740_length_478_cov_20.873051_g824_i3 PRJNA315314 2740 478 20.873051 99.77318378 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 66.2 2.93e-9   NR HSS49596.1 2651171 g824 i3 50 0.414225941422594 66 30 39.5 2 4 192 292 357 HSS49596.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 198 66.2 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;