RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA315314", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJNA315314 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655544 1655544 PRJNA315314_S_NODE_18322_length_192_cov_4581.717791_g18001_i0 PRJNA315314 18322 192 4581.717791 8796.89815872 Lentivirus pum 3418653 Viruses Viruses 73.1 1.27e-8   NTclustered gi|1817429831|gb|MN531141.1| 12804 g18001 i0 95.652 22.5572916666667 46 1 23 1 148 192 3613 3658 Puma lentivirus isolate x1432, partial genome blastn 4331 73.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus pum
9993380 9993380 PRJNA315314_S_NODE_13928_length_218_cov_3941.666667_g13607_i0 PRJNA315314 13928 218 3941.666667 8592.83333406 Viruses 10239 Viruses Viruses 71.3 5.32e-8   NTclustered gi|1817429831|gb|MN531141.1| 12804 g13607 i0 97.561 20.0366972477064 41 1 19 0 178 218 3618 3658 Puma lentivirus isolate x1432, partial genome blastn 4368 71.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus pum
27010962 27010962 PRJNA315314_S_NODE_11362_length_240_cov_10.943128_g11041_i0 PRJNA315314 11362 240 10.943128 26.2635072 Moloney murine leukemia virus 11801 Viruses Viruses 160 2.1099999999999998e-43   NR NP_057933.2 11801 g11041 i0 98.7 8.7625 78 1 97.5 0 7 240 658 735 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2103 160 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29586215 29586215 PRJNA315314_S_NODE_10070_length_255_cov_4.269912_g9749_i0 PRJNA315314 10070 255 4.269912 10.8882756 Gammaretrovirus 153135 Viruses Viruses 160 1.83e-43   NR ABU54795.1 11786 g9749 i0 96.4 18.7764705882353 84 3 98.8 0 2 253 1210 1293 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 4788 160 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31830062 31830062 PRJNA315314_S_NODE_1677_length_600_cov_11.984238_g1411_i0 PRJNA315314 1677 600 11.984238 71.905428 Gammaretrovirus 153135 Viruses Viruses 416 1.6499999999999999e-131   NR NP_057933.2 11801 g1411 i0 100 10 200 0 100 0 1 600 805 1004 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6000 416 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32477368 32477368 PRJNA315314_S_NODE_2719_length_480_cov_8.356984_g2406_i0 PRJNA315314 2719 480 8.356984 40.1135232 Moloney murine leukemia virus 11801 Viruses Viruses 324 1.5599999999999995e-99   NR NP_057933.2 11801 g2406 i0 99.4 4.96875 159 1 99.4 0 479 3 1056 1214 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2385 324 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;