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contig_metadata

31 rows where bioproject = "PRJNA315314" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 31 ✖

bioproject 1

  • PRJNA315314 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1065389 1065389 PRJNA315314_S_NODE_3901_length_404_cov_5.293333_g3580_i0 PRJNA315314 3901 404 5.293333 21.38506532 Chlorellaceae 35461 Plants Plants 78.7 6.39e-10   NTclustered gi|741870561|ref|NC_026009.1| 3075 g3580 i0 90 0.923267326732673 60 6 15 0 144 203 32383 32324 Auxenochlorella protothecoides mitochondrion, complete genome blastn 373 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
2931677 2931677 PRJNA315314_S_NODE_6383_length_319_cov_8.675862_g6062_i0 PRJNA315314 6383 319 8.675862 27.67599978 Marsupiomonas pelliculata 1034818 Plants Plants 196 1.31e-45   NTclustered gi|371782105|emb|HE610137.1| 1034818 g6062 i0 81.481 81.012539184953 243 41 76 4 78 319 2441 2202 Marsupiomonas pelliculata partial 28S rRNA gene, strain PLY 441 blastn 25843 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Marsupiomonadales Marsupiomonadaceae Marsupiomonas Marsupiomonas pelliculata
4893069 4893069 PRJNA315314_S_NODE_11464_length_239_cov_135.009524_g11143_i0 PRJNA315314 11464 239 135.009524 322.67276236 Chlamydomonas 3052 Plants Plants 414 2.38e-111   NTclustered gi|167047969|gb|EU410621.1| 3055 g11143 i0 97.908 100.28870292887 239 5 100 0 1 239 1924 1686 Chlamydomonas reinhardtii 26S ribosomal RNA gene, partial sequence blastn 23969 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4893197 4893197 PRJNA315314_S_NODE_31684_length_151_cov_16.811475_g31363_i0 PRJNA315314 31684 151 16.811475 25.38532725 Choricystis 41299 Plants Plants 128 1.9899999999999999e-25   NTclustered gi|328349685|emb|FN298929.1| 41300 g31363 i0 93.103 76.6225165562914 87 6 58 0 65 151 2192 2106 Choricystis sp. TP-2009 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain SAG 211-40c blastn 11570 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
6168136 6168136 PRJNA315314_S_NODE_25305_length_166_cov_16.408759_g24984_i0 PRJNA315314 25305 166 16.408759 27.23853994 Chlamydomonas 3052 Plants Plants 307 2.69e-79   NTclustered gi|422779560|gb|JX839535.1| 3055 g24984 i0 100 98.7530120481928 166 0 100 0 1 166 481 316 Chlamydomonas reinhardtii strain CC-621 28S ribosomal RNA gene, partial sequence blastn 16393 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7443191 7443191 PRJNA315314_S_NODE_20566_length_182_cov_8.228758_g20245_i0 PRJNA315314 20566 182 8.228758 14.97633956 Eukaryota 2759 Plants Plants 60.2 9.25e-5   NTclustered gi|2306645722|gb|OK189530.1| 121088 g20245 i0 94.872 7.26373626373626 39 1 21 1 19 56 66846 66808 Ostreobium quekettii voucher Chloroplast genome chloroplast, complete genome blastn 1322 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
14409513 14409513 PRJNA315314_S_NODE_11432_length_240_cov_2.668246_g11111_i0 PRJNA315314 11432 240 2.668246 6.4037904 Eukaryota 2759 Plants Plants 132 1.18e-33   NR KAF5842043.1 3046 g11111 i0 82.3 10.8625 79 14 98.8 0 3 239 500 578 KAF5842043.1 heat shock protein 90 [Dunaliella salina] diamond 2607 133 0.992481203007519 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
18232471 18232471 PRJNA315314_S_NODE_21115_length_180_cov_3.509934_g20794_i0 PRJNA315314 21115 180 3.509934 6.3178812 Chlorosarcinopsis eremi 332213 Plants Plants 82.4 1.95e-11   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g20794 i0 83.333 2.06666666666667 90 13 53 2 65 154 131318 131405 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 372 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
18232546 18232546 PRJNA315314_S_NODE_26195_length_164_cov_2.385185_g25874_i0 PRJNA315314 26195 164 2.385185 3.9117034 Eukaryota 2759 Plants Plants 101 7.74e-24   NR KAF5839695.1 3046 g25874 i0 94.4 151.115853658537 54 3 98.8 0 3 164 134 187 KAF5839695.1 26S proteasome regulatory subunit [Dunaliella salina] diamond 24783 102 0.990196078431373 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
22057311 22057311 PRJNA315314_S_NODE_2178_length_534_cov_3.516832_g1887_i0 PRJNA315314 2178 534 3.516832 18.77988288 Chlamydomonas reinhardtii 3055 Plants Plants 324 1.01e-83   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g1887 i0 77.944 84.6910112359551 535 106 99 11 1 529 329 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 45225 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23332886 23332886 PRJNA315314_S_NODE_24619_length_168_cov_393.834532_g24298_i0 PRJNA315314 24619 168 393.834532 661.64201376 Haematococcus lacustris 44745 Plants Plants 248 1.68e-61   NTclustered gi|1279575454|gb|MF683078.1| 44745 g24298 i0 93.452 288.291666666667 168 9 100 2 1 168 3634 3799 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 48433 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
23332981 23332981 PRJNA315314_S_NODE_3279_length_440_cov_9.330900_g2959_i0 PRJNA315314 3279 440 9.3309 41.05596 Eukaryota 2759 Plants Plants 203 1.41e-63   NR XP_011396407.1 3075 g2959 i0 78.9 66.3272727272727 128 27 87.3 0 3 386 76 203 XP_011396407.1 40S ribosomal protein S5-2 [Auxenochlorella protothecoides] diamond 29184 203 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26711733 26711733 PRJNA315314_S_NODE_1301_length_670_cov_6.160686_g1066_i0 PRJNA315314 1301 670 6.160686 41.2765962 root 1 Root_unresolved Root_unresolved 210 1.99e-62   NR KAG2485882.1 47281 g1066 i0 50.5 2.55671641791045 192 91 84.2 1 566 3 169 360 KAG2485882.1 hypothetical protein HYH03_015465 [Edaphochlamys debaryana] diamond 1713 212 0.990566037735849 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
26807072 26807072 PRJNA315314_S_NODE_27101_length_162_cov_1.353383_g26780_i0 PRJNA315314 27101 162 1.353383 2.19248046 Monoraphidium 34111 Plants Plants 60.5 4.68e-10   NR KAI8469886.1 39955 g26780 i0 61.4 2.51851851851852 44 17 81.5 0 133 2 41 84 KAI8469886.1 MAG: hypothetical protein J3K34DRAFT_422300 [Monoraphidium minutum] diamond 408 60.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
26884681 26884681 PRJNA315314_S_NODE_30941_length_153_cov_2.024194_g30620_i0 PRJNA315314 30941 153 2.024194 3.09701682 Auxenochlorella protothecoides 3075 Plants Plants 82.8 8.01e-17   NR XP_011401541.1 3075 g30620 i0 78 1.96078431372549 50 11 98 0 3 152 490 539 XP_011401541.1 T-complex protein 1 subunit alpha [Auxenochlorella protothecoides] diamond 300 82.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26947677 26947677 PRJNA315314_S_NODE_25802_length_165_cov_2.566176_g25481_i0 PRJNA315314 25802 165 2.566176 4.2341904 Micractinium conductrix 554055 Plants Plants 86.3 5.85e-18   NR PSC71066.1 554055 g25481 i0 67.9 0.963636363636364 53 17 96.4 0 163 5 35 87 PSC71066.1 argonaute 1 isoform A [Micractinium conductrix] diamond 159 86.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
27990418 27990418 PRJNA315314_S_NODE_14345_length_216_cov_1.721925_g14024_i0 PRJNA315314 14345 216 1.721925 3.719358 Pedinophyceae sp. YPF-7 765719 Plants Plants 109 7.32e-26   NR CAG9462965.1 765719 g14024 i0 77.1 3.88888888888889 70 16 97.2 0 214 5 409 478 CAG9462965.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 840 109 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
28685135 28685135 PRJNA315314_S_NODE_21007_length_181_cov_1.394737_g20686_i0 PRJNA315314 21007 181 1.394737 2.52447397 Micractinium sp. CCAP 211/92 554058 Plants Plants 65.5 1.57e-10   NR KAL4446209.1 554058 g20686 i0 53.8 0.861878453038674 52 24 86.2 0 2 157 528 579 KAL4446209.1 hypothetical protein ABPG77_003016 [Micractinium sp. CCAP 211/92] diamond 156 65.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
29253061 29253061 PRJNA315314_S_NODE_5329_length_348_cov_1.423197_g5008_i0 PRJNA315314 5329 348 1.423197 4.95272556 Sanguina aurantia 2578422 Plants Plants 62 1.19e-9   NR MEW5315242.1 2578422 g5008 i0 38.5 0.896551724137931 104 58 88.8 4 2 310 2 100 MEW5315242.1 hypothetical protein [Sanguina aurantia] diamond 312 62 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
29284722 29284722 PRJNA315314_S_NODE_4509_length_377_cov_2.528736_g4188_i0 PRJNA315314 4509 377 2.528736 9.53333472 Bryopsis sp. KO-2 3115439 Plants Plants 58.9 3.22e-7   NR GMH40151.1 3041901 g4188 i0 37.9 1.57559681697613 103 53 80.4 4 3 305 284 377 GMH40151.1 hypothetical protein BSKO_08055 [Bryopsis sp. KO-2023] diamond 594 58.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
29663398 29663398 PRJNA315314_S_NODE_32010_length_151_cov_1.745902_g31689_i0 PRJNA315314 32010 151 1.745902 2.63631202 Helicosporidium sp. ATCC 5 1907511 Plants Plants 52.8 2.95e-6   NR KDD77018.1 1291522 g31689 i0 52.1 1.90728476821192 48 23 95.4 0 146 3 172 219 KDD77018.1 hypothetical protein H632_c39p3, partial [Helicosporidium sp. ATCC 50920] diamond 288 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
29712438 29712438 PRJNA315314_S_NODE_20690_length_182_cov_2.516340_g20369_i0 PRJNA315314 20690 182 2.51634 4.5797388 Eukaryota 2759 Plants Plants 103 8.49e-24   NR RMZ56549.1 3075 g20369 i0 84.3 74.7692307692308 51 8 84.1 0 29 181 41 91 RMZ56549.1 hypothetical protein APUTEX25_001396 [Auxenochlorella protothecoides] diamond 13608 103 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
30074188 30074188 PRJNA315314_S_NODE_26912_length_162_cov_2.616541_g26591_i0 PRJNA315314 26912 162 2.616541 4.23879642 Chlamydomonas eustigma 1157962 Plants Plants 74.3 1.86e-14   NR GAX84228.1 1157962 g26591 i0 64.6 0.888888888888889 48 16 88.9 1 1 144 100 146 GAX84228.1 hypothetical protein CEUSTIGMA_g11651.t1 [Chlamydomonas eustigma] diamond 144 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
30327639 30327639 PRJNA315314_S_NODE_8392_length_279_cov_3.908000_g8071_i0 PRJNA315314 8392 279 3.908 10.90332 Chlorella ohadii 2649997 Plants Plants 48.1 6.89e-4   NR KAI7845837.1 2649997 g8071 i0 27.5 3.60215053763441 91 60 91.4 2 9 263 320 410 KAI7845837.1 hypothetical protein COHA_000747 [Chlorella ohadii] diamond 1005 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella ohadii
30453736 30453736 PRJNA315314_S_NODE_26353_length_164_cov_1.222222_g26032_i0 PRJNA315314 26353 164 1.222222 2.00444408 Apatococcus lobatus 904363 Plants Plants 55.5 4.12e-7   NR KAK9818541.1 904363 g26032 i0 51.8 3.42073170731707 56 20 91.5 2 14 163 89 143 KAK9818541.1 hypothetical protein WJX74_002024 [Apatococcus lobatus] diamond 561 55.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Apatococcus Apatococcus lobatus
30945046 30945046 PRJNA315314_S_NODE_30934_length_153_cov_2.056452_g30613_i0 PRJNA315314 30934 153 2.056452 3.14637156 Eukaryota 2759 Plants Plants 57 3.45e-8   NR PRW57226.1 3076 g30613 i0 54.2 53.6862745098039 48 22 94.1 0 148 5 56 103 PRW57226.1 60S ribosomal L18a-2 [Chlorella sorokiniana] diamond 8214 57 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
31749365 31749365 PRJNA315314_S_NODE_27857_length_160_cov_1.335878_g27536_i0 PRJNA315314 27857 160 1.335878 2.1374048 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 79 5.84e-17   NR KAG7672495.1 1650286 g27536 i0 58.8 2.94375 51 21 95.6 0 8 160 41 91 KAG7672495.1 hypothetical protein KSW81_001459 [Chlorella desiccata (nom. nud.)] diamond 471 79 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
31893502 31893502 PRJNA315314_S_NODE_6717_length_312_cov_2.943463_g6396_i0 PRJNA315314 6717 312 2.943463 9.18360456 Eukaryota 2759 Plants Plants 114 2.41e-28   NR KAK9815254.1 41462 g6396 i0 82.7 8.97115384615385 104 18 100 0 1 312 39 142 KAK9815254.1 hypothetical protein WJX72_000717 [[Myrmecia] bisecta] diamond 2799 114 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
32097457 32097457 PRJNA315314_S_NODE_32078_length_151_cov_1.442623_g31757_i0 PRJNA315314 32078 151 1.442623 2.17836073 Sanguina aurantia 2578422 Plants Plants 42.4 0.0147   NR MEW5316514.1 2578422 g31757 i0 46.9 0.635761589403974 32 17 63.6 0 16 111 319 350 MEW5316514.1 hypothetical protein [Sanguina aurantia] diamond 96 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
32305143 32305143 PRJNA315314_S_NODE_1659_length_603_cov_11.418118_g1395_i0 PRJNA315314 1659 603 11.418118 68.85125154 Chlorellaceae 35461 Plants Plants 244 6.48e-79   NR KAK2079457.1 3111 g1395 i0 69.3 10.7960199004975 179 54 88.6 1 602 69 16 194 KAK2079457.1 60S ribosomal protein L15-2 [Prototheca wickerhamii] diamond 6510 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
32809885 32809885 PRJNA315314_S_NODE_14600_length_214_cov_2.189189_g14279_i0 PRJNA315314 14600 214 2.189189 4.68486446 Scenedesmus 3087 Plants Plants 77.4 9.17e-15   NR KAF6262894.1 2650976 g14279 i0 50.6 2.22897196261682 79 31 99.5 1 1 213 112 190 KAF6262894.1 hypothetical protein COO60DRAFT_1493309 [Scenedesmus sp. NREL 46B-D3] diamond 477 77.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;