RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA315314" and tax_clade = "Provora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Provora · 4 ✖

bioproject 1

  • PRJNA315314 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655399 1655399 PRJNA315314_S_NODE_10562_length_249_cov_5.686364_g10241_i0 PRJNA315314 10562 249 5.686364 14.15904636 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 69.4 2.24e-7   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g10241 i0 100 13.5421686746988 37 0 15 0 1 37 7051 7087 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 3372 69.4 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista
8034195 8034195 PRJNA315314_S_NODE_2927_length_462_cov_19.745958_g2610_i0 PRJNA315314 2927 462 19.745958 91.22632596 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 193 2.53e-44   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g2610 i0 88.679 38.3181818181818 159 16 34 2 1 159 6922 7078 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 17703 193 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista
13134677 13134677 PRJNA315314_S_NODE_31711_length_151_cov_7.639344_g31390_i0 PRJNA315314 31711 151 7.639344 11.53540944 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 60.2 7.36e-5   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g31390 i0 100 18.9403973509934 32 0 21 0 1 32 7056 7087 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 2860 60.2 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista
22057473 22057473 PRJNA315314_S_NODE_4158_length_392_cov_18.460055_g3837_i0 PRJNA315314 4158 392 18.460055 72.3634156 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 302 3.37e-77   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g3837 i0 81.17 50.2448979591837 393 59 99 14 5 392 7304 6922 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 19696 302 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;