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contig_metadata

25 rows where bioproject = "PRJNA315314", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 25 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 25 ✖

bioproject 1

  • PRJNA315314 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655538 1655538 PRJNA315314_S_NODE_17902_length_194_cov_4382.678788_g17581_i0 PRJNA315314 17902 194 4382.678788 8502.39684872 Chromadoropsis vivipara 73933 Nematoda Nematoda 172 1.23e-38   NTclustered gi|2063683635|gb|MZ504149.1| 73933 g17581 i0 94.595 34.7577319587629 111 6 57 0 1 111 3702 3592 Chromadoropsis vivipara isolate C-Mv internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 6743 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Chromadoridae Chromadoropsis Chromadoropsis vivipara
1655694 1655694 PRJNA315314_S_NODE_27922_length_159_cov_12.415385_g27601_i0 PRJNA315314 27922 159 12.415385 19.74046215 Campydora demonstrans 211217 Nematoda Nematoda 110 7.7e-20   NTclustered gi|2623950732|gb|OR852751.1| 211217 g27601 i0 79.503 29.4213836477987 161 28 100 5 1 159 4472 4315 Campydora demonstrans isolate OVN-2022 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4678 110 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Enoplida Campydoridae Campydora Campydora demonstrans
7443271 7443271 PRJNA315314_S_NODE_5266_length_350_cov_3.190031_g4945_i0 PRJNA315314 5266 350 3.190031 11.1651085 Cylicocyclus 53337 Nematoda Nematoda 113 1.5e-20   NTclustered gi|2166980952|gb|MZ888509.1| 71428 g4945 i0 88.421 1.08571428571429 95 10 27 1 80 173 7122 7216 Cylicocyclus auriculatus mitochondrion, complete genome blastn 380 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus auriculatus
9309096 9309096 PRJNA315314_S_NODE_7948_length_286_cov_7.319066_g7627_i0 PRJNA315314 7948 286 7.319066 20.93252876 Campydora demonstrans 211217 Nematoda Nematoda 265 3.12e-66   NTclustered gi|2623950732|gb|OR852751.1| 211217 g7627 i0 83.86 2.95454545454545 285 38 98 8 6 286 6489 6209 Campydora demonstrans isolate OVN-2022 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 845 265 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Enoplida Campydoridae Campydora Campydora demonstrans
10584785 10584785 PRJNA315314_S_NODE_30149_length_154_cov_16.216000_g29828_i0 PRJNA315314 30149 154 16.216 24.97264 Ascaris lumbricoides 6252 Nematoda Nematoda 76.8 7.5e-10   NTclustered gi|347983|gb|L22247.1|NEMSNUB 6252 g29828 i0 86.301 23.6688311688312 73 6 47 4 1 72 452 383 Ascaris lumbricoides snRNA U2-1 gene, snRNA U2-2 pseudogenes, and snRNA U2-1 gene, complete sequence blastn 3645 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides
13134749 13134749 PRJNA315314_S_NODE_6051_length_328_cov_5.518395_g5730_i0 PRJNA315314 6051 328 5.518395 18.1003356 Rhigonema thysanophora 435730 Nematoda Nematoda 401 2.6599999999999993e-107   NTclustered gi|1255552292|gb|MG195996.1| 435730 g5730 i0 88.822 100.835365853659 331 31 100 6 1 328 2002 1675 Rhigonema thysanophora isolate X-3981 large subunit ribosomal RNA gene, partial sequence blastn 33074 401 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhigonematidae Rhigonema Rhigonema thysanophora
13818719 13818719 PRJNA315314_S_NODE_24311_length_169_cov_15.407143_g23990_i0 PRJNA315314 24311 169 15.407143 26.03807167 Chromadorea 119089 Nematoda Nematoda 307 2.73e-79   NTclustered gi|283484471|gb|GQ892827.1| 70222 g23990 i0 99.408 100 169 1 100 0 1 169 1096 928 Plectus aquatilis 18S ribosomal RNA gene, partial sequence blastn 16900 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus aquatilis
14409914 14409914 PRJNA315314_S_NODE_5012_length_358_cov_31.404255_g4691_i0 PRJNA315314 5012 358 31.404255 112.4272329 Nematoda environmental sample 554024 Nematoda Nematoda 488 2.1799999999999998e-133   NTclustered gi|460423923|gb|KC306538.1| 554024 g4691 i0 91.365 94.9050279329609 359 28 100 3 1 358 384 28 Nematoda environmental sample clone BT_Euk_C8 18S ribosomal RNA gene, partial sequence blastn 33976 488 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
15093131 15093131 PRJNA315314_S_NODE_9572_length_261_cov_3128.896552_g9251_i0 PRJNA315314 9572 261 3128.896552 8166.42000072 Metazoa 33208 Nematoda Nematoda 405 1.59e-108   NTclustered gi|2646098909|gb|PP099678.1| 49354 g9251 i0 99.55 85.1072796934866 222 1 85 0 35 256 588 809 Plectus sp. isolate Nem.501 small subunit ribosomal RNA gene, partial sequence blastn 22213 405 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus sp.
15683600 15683600 PRJNA315314_S_NODE_31833_length_151_cov_2.934426_g31512_i0 PRJNA315314 31833 151 2.934426 4.43098326 Mesorhabditis sp. 'Bursilla' PS1179 466951 Nematoda Nematoda 156 9.13e-34   NTclustered gi|157787501|gb|EF990722.1| 466951 g31512 i0 87.681 94.364238410596 138 12 91 2 4 141 1360 1228 Bursilla sp. PS1179 28S large subunit ribosomal RNA gene, partial sequence blastn 14249 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis sp. 'Bursilla' PS1179
16958035 16958035 PRJNA315314_S_NODE_10814_length_246_cov_5.760369_g10493_i0 PRJNA315314 10814 246 5.760369 14.17050774 Caenorhabditis remanei 31234 Nematoda Nematoda 82.4 2.83e-11   NTclustered gi|2445393885|ref|XM_053735838.1| 31234 g10493 i0 97.872 18.3780487804878 47 1 19 0 200 246 118 164 Caenorhabditis remanei uncharacterized protein (GCK72_024337), partial mRNA blastn 4521 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
21467151 21467151 PRJNA315314_S_NODE_5057_length_357_cov_4.939024_g4736_i0 PRJNA315314 5057 357 4.939024 17.63231568 Opisthokonta 33154 Nematoda Nematoda 124 1.21e-33   NR KHN76789.1 6265 g4736 i0 59.6 11.8067226890756 94 38 79 0 356 75 42 135 KHN76789.1 40S ribosomal protein S15 [Toxocara canis] diamond 4215 125 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
22742060 22742060 PRJNA315314_S_NODE_12918_length_226_cov_12.573604_g12597_i0 PRJNA315314 12918 226 12.573604 28.41634504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 1.18e-19   NTclustered gi|158821918|gb|EU195982.1| 54126 g12597 i0 88.298 59.6946902654867 94 7 41 4 4 95 1960 1869 Pristionchus pacificus strain 312 28S ribosomal RNA gene, partial sequence blastn 13491 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
24017243 24017243 PRJNA315314_S_NODE_8619_length_275_cov_27.040650_g8298_i0 PRJNA315314 8619 275 27.04065 74.3617875 Rhabditida 6236 Nematoda Nematoda 231 3.0199999999999996e-56   NTclustered gi|159684|gb|M74585.1|NEMRGB 6252 g8298 i0 81.949 27.7272727272727 277 46 100 4 1 275 488 214 Ascaris lumbricoides 18S rRNA gene, 5' end, and 26S rRNA gene, 3' end blastn 7625 233 0.991416309012876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides
26599211 26599211 PRJNA315314_S_NODE_26981_length_162_cov_2.045113_g26660_i0 PRJNA315314 26981 162 2.045113 3.31308306 Soboliphyme baturini 241478 Nematoda Nematoda 82 1.07e-18   NR VDP36307.1 241478 g26660 i0 64.2 2.94444444444444 53 19 98.1 0 2 160 10 62 VDP36307.1 unnamed protein product [Soboliphyme baturini] diamond 477 82 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
26853097 26853097 PRJNA315314_S_NODE_25241_length_167_cov_1.456522_g24920_i0 PRJNA315314 25241 167 1.456522 2.43239174 Heligmosomoides polygyrus 6339 Nematoda Nematoda 60.5 6.37e-9   NR VDO70226.1 6339 g24920 i0 61.9 0.754491017964072 42 16 75.4 0 40 165 44 85 VDO70226.1 unnamed protein product [Heligmosomoides polygyrus] diamond 126 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
27264128 27264128 PRJNA315314_S_NODE_6063_length_328_cov_3.046823_g5742_i0 PRJNA315314 6063 328 3.046823 9.99357944 Necator americanus 51031 Nematoda Nematoda 97.8 1.1200000000000001e-22   NR ETN79618.1 51031 g5742 i0 84.5 0.530487804878049 58 7 53 1 154 327 1 56 ETN79618.1 firmicute plasmid replication protein [Necator americanus] diamond 174 97.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
27674787 27674787 PRJNA315314_S_NODE_11524_length_239_cov_2.957143_g11203_i0 PRJNA315314 11524 239 2.957143 7.06757177 Heterodera trifolii 157864 Nematoda Nematoda 72 1.67e-12   NR KAL3093637.1 157864 g11203 i0 64.3 2.14644351464435 56 20 70.3 0 237 70 429 484 KAL3093637.1 hypothetical protein niasHT_026675 [Heterodera trifolii] diamond 513 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28576109 28576109 PRJNA315314_S_NODE_15467_length_208_cov_3.452514_g15146_i0 PRJNA315314 15467 208 3.452514 7.18122912 Metazoa 33208 Nematoda Nematoda 52 7.87e-7   NR VDK89132.1 42156 g15146 i0 50 2.33653846153846 54 26 77.9 1 198 37 1 53 VDK89132.1 unnamed protein product, partial [Litomosoides sigmodontis] diamond 486 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
29537396 29537396 PRJNA315314_S_NODE_16690_length_201_cov_2.767442_g16369_i0 PRJNA315314 16690 201 2.767442 5.56255842 Enterobius vermicularis 51028 Nematoda Nematoda 55.1 9.96e-7   NR VDD96011.1 51028 g16369 i0 41.8 1.17910447761194 79 34 100 3 201 1 581 659 VDD96011.1 unnamed protein product, partial [Enterobius vermicularis] diamond 237 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
30250055 30250055 PRJNA315314_S_NODE_18472_length_192_cov_1.797546_g18151_i0 PRJNA315314 18472 192 1.797546 3.45128832 Opisthokonta 33154 Nematoda Nematoda 71.2 1.49e-12   NR VDK42925.1 6269 g18151 i0 61.9 20.9375 63 23 96.9 1 187 2 1 63 VDK42925.1 unnamed protein product [Anisakis simplex] diamond 4020 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
30832634 30832634 PRJNA315314_S_NODE_9694_length_260_cov_3.541126_g9373_i0 PRJNA315314 9694 260 3.541126 9.2069276 Necator americanus 51031 Nematoda Nematoda 150 7.05e-44   NR ETN79618.1 51031 g9373 i0 87.2 1.98461538461538 86 11 99.2 0 260 3 51 136 ETN79618.1 firmicute plasmid replication protein [Necator americanus] diamond 516 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31148162 31148162 PRJNA315314_S_NODE_27275_length_161_cov_2.946970_g26954_i0 PRJNA315314 27275 161 2.94697 4.7446217 Auanema sp. JU1783 2878363 Nematoda Nematoda 48.5 1.02e-4   NR CAI4224279.1 2878363 g26954 i0 68.4 0.708074534161491 38 9 67.1 2 110 3 21 57 CAI4224279.1 unnamed protein product [Auanema sp. JU1783] diamond 114 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
31496654 31496654 PRJNA315314_S_NODE_17016_length_199_cov_4.129412_g16695_i0 PRJNA315314 17016 199 4.129412 8.21752988 Trichuris suis 68888 Nematoda Nematoda 59.3 2.69e-9   NR KFD55927.1 68888 g16695 i0 65.9 1.61306532663317 44 15 66.3 0 1 132 12 55 KFD55927.1 hypothetical protein M513_03051, partial [Trichuris suis] diamond 321 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32368388 32368388 PRJNA315314_S_NODE_22319_length_176_cov_1.829932_g21998_i0 PRJNA315314 22319 176 1.829932 3.22068032 Metazoa 33208 Nematoda Nematoda 89.4 2.24e-19   NR XP_003106358.2 31234 g21998 i0 67.9 10.9261363636364 56 15 95.5 1 2 169 289 341 XP_003106358.2 hypothetical protein GCK72_020866 [Caenorhabditis remanei] diamond 1923 89.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;