RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA315314", tax_clade = "Metamonada" and tax_phylum = "Preaxostyla"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Preaxostyla · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA315314 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9308972 9308972 PRJNA315314_S_NODE_31708_length_151_cov_7.983607_g31387_i0 PRJNA315314 31708 151 7.983607 12.05524657 Oxymonas sp. Glx478OxA 2580153 Preaxostyla other_Eukaryota 99 1.56e-16   NTclustered gi|1653342969|gb|MK937355.1| 2580153 g31387 i0 96.61 42.5562913907285 59 2 39 0 1 59 1603 1661 Oxymonas sp. Glx478OxA clone Glx478_Ox2 small subunit ribosomal RNA gene, partial sequence blastn 6426 99 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Oxymonadidae Oxymonas Oxymonas sp. Glx478OxA
29600339 29600339 PRJNA315314_S_NODE_31130_length_153_cov_1.064516_g30809_i0 PRJNA315314 31130 153 1.064516 1.62870948 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 64.3 2.59e-10   NR KAJ4460207.1 342808 g30809 i0 58.8 1 51 21 100 0 1 153 121 171 KAJ4460207.1 putative Ribose-phosphate pyrophosphokinase 4 [Paratrimastix pyriformis] diamond 153 64.3 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
31780968 31780968 PRJNA315314_S_NODE_5737_length_336_cov_19.758958_g5416_i0 PRJNA315314 5737 336 19.758958 66.39009888 Blattamonas nauphoetae 2049346 Preaxostyla other_Eukaryota 101 7.81e-25   NR KAK2944236.1 2049346 g5416 i0 53.7 1.70535714285714 95 42 84.8 2 3 287 54 146 KAK2944236.1 hypothetical protein BLNAU_20846 [Blattamonas nauphoetae] diamond 573 101 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;