RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA315314", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA315314 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5484548 5484548 PRJNA315314_S_NODE_7145_length_302_cov_3.516484_g6824_i0 PRJNA315314 7145 302 3.516484 10.61978168 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 185 2.66e-42   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g6824 i0 82.063 61.3907284768212 223 34 72 4 76 293 1244697 1244918 Gemmatimonas phototrophica strain AP64, complete genome blastn 18540 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
6168220 6168220 PRJNA315314_S_NODE_5865_length_333_cov_4.161184_g5544_i0 PRJNA315314 5865 333 4.161184 13.85674272 Gemmatimonas 173479 Bacteria Bacteria 566 9.06e-157   NTclustered gi|470475286|ref|NR_076270.1| 173480 g5544 i0 97.297 124.891891891892 333 9 100 0 1 333 941 1273 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 41589 566 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
16958310 16958310 PRJNA315314_S_NODE_27674_length_160_cov_2.786260_g27353_i0 PRJNA315314 27674 160 2.78626 4.458016 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 169 1.26e-37   NTclustered gi|2874253938|emb|OY970263.1| 412054 g27353 i0 87.671 120.2375 146 16 91 2 3 147 801856 801712 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 19238 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16958324 16958324 PRJNA315314_S_NODE_28854_length_157_cov_4.281250_g28533_i0 PRJNA315314 28854 157 4.28125 6.7215625 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 222 9.329999999999999e-54   NTclustered gi|2874253938|emb|OY970263.1| 412054 g28533 i0 95.07 313.84076433121 142 6 90 1 17 157 801908 802049 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 49273 222 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
32319322 32319322 PRJNA315314_S_NODE_9599_length_261_cov_5.353448_g9278_i0 PRJNA315314 9599 261 5.353448 13.97249928 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.1 0.00699   NR MCG8468341.1 2026742 g9278 i0 44.3 0.701149425287356 61 30 70.1 1 70 252 133 189 MCG8468341.1 hypothetical protein [Gemmatimonadota bacterium] diamond 183 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;